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Thanks for reporting. This is a known issue in the first-mate core package of Atom. See atom/first-mate#90 for a related PR and reasoning for why it's not being actively pursued. Closing this because it's an issue with first-mate.
If you have a code block that has a syntax error (e.g., json with no close brace), all markdown highlighting after the code block is broken.
Expected behavior: The code block end should take priority and end that section allowing normal markdown parsing to resume.
Example:
{
This is not highlighted correctly
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