NAMESPACE

# Generated by roxygen2: do not edit by hand

export(astir_paper_theme)
export(cohort_colours)
export(createHeatmap)
export(get_celltypes)
export(imc_exclusive_marker_score)
export(jackson_basel_colours)
export(patient_clinSubtype_colours)
export(patient_clinSubtype_colours_wagner)
export(patient_response_colours)
export(plotSpatial)
export(print_marker_info)
export(read_markers)
export(tidy_rownames_jackson)
export(to_csv)
export(winsorize)
import(cowplot)
import(ggplot2)
importFrom(BiocGenerics,rownames)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(MASS,rlm)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(broom,tidy)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(plyr,mapvalues)
importFrom(scater,plotColData)
importFrom(stats,quantile)
importFrom(stringr,str_locate)
importFrom(stringr,str_sub)
importFrom(tibble,tibble)
importFrom(utils,data)
importFrom(utils,write.csv)
importFrom(viridis,viridis)
importFrom(wesanderson,wes_palette)
importFrom(yaml,read_yaml)