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TargetP2 parser will fail if a chloroplast target peptide is found. #8

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darcyabjones opened this issue Nov 22, 2021 · 1 comment
Open

TargetP2 parser will fail if a chloroplast target peptide is found. #8

darcyabjones opened this issue Nov 22, 2021 · 1 comment

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@darcyabjones
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Even in non-plant mode it is possible for TargetP to predict chloroplast target peptides.
It will then look like this...

P000000HL       luTP    0.801848        0.000530        0.197623        CS pos luTP: 75-76. ADA-KV. Pr: 0.7217; CS pos cTP: 75-76. Pr: 0.7576
P000002FG      luTP    0.571432        0.000437        0.428130        CS pos luTP: 77-78. VIA-AN. Pr: 0.8745; CS pos cTP: 34-35. Pr: 0.5261

This will cause the script to crash.
Handling the second column is easy enough, but the regular expression for outputting the GFF needs to change, since apparently it can contain multiple entries.

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