docker-compose-template.yml

version: "2"

services:
  tf-pred: # Run prediction on the final data in (from /final_CT)
    image: chezhipower/smi_pipeline:latest
    container_name: 'smi_on_server3'
    ports:
      - "8884:8888"
    volumes: 
      - /home/elan/sarcopenia_segmentation/Muscle_Segmentation:/tf/smipipeline
      - /home/elan/sarcopenia_segmentation/pickles:/tf/pickles
      - /home/elan/sarcopenia_segmentation/final_CT:/tf/data  
      - /home/elan/sarcopenia_segmentation/models:/tf/models   
      - /home/elan/sarcopenia_segmentation/output:/tf/output
    runtime: nvidia
    environment:
      - NVIDIA_VISIBLE_DEVICES=0
  rpy: # Run Analysis on the final data in (from /final_CT)
    image: rpy2/jupyter_ds-ubuntu
    container_name: 'smi_rpy'
    ports:
      - "8898:8888"
    volumes: 
      - /home/elan/sarcopenia_segmentation/Muscle_Segmentation:/home/jupyteruser/smipipeline
      - /home/elan/sarcopenia_segmentation/pickles:/home/jupyteruser/pickles
      - /home/elan/sarcopenia_segmentation/final_CT:/home/jupyteruser/data  
      - /home/elan/sarcopenia_segmentation/models:/home/jupyteruser/models   
      - /home/elan/sarcopenia_segmentation/output:/home/jupyteruser/output