python-api: v0.4.0

0.4.0 (2024-03-29)

Features

• build subgraph from term ID (#156) (3f4cd4b)

python-api: v0.3.1

0.3.1 (2024-03-27)

Misc

• reformat examples in docstrings (#157) (e5528e1)

BugFixes

• move get_ontology_download_url. (#152) (8365411)
• ontology_parser.py defaults to latest (#153) (5b94d6e)

python-api: v0.3.0

0.3.0 (2024-03-25)

Features

• write python API demo notebook (#101) (bfae292)

python-api: v0.2.0

0.2.0 (2024-03-25)

Features

• add function to fetch curated ontology term lists (#141) (5c7db62)
• set-up docsite (#99) (b7591bc)

Misc

• enable code coverage (#143) (c52c436)
• use trusted publisher to publish pypi package. (#137) (5fc917b)

BugFixes

• make constant.py private (46d04a4)
• typos (76ae9fa)

ontology-assets: v0.2.0

0.2.0 (2024-03-25)

Features

• add function to fetch curated ontology term lists (#141) (5c7db62)

Misc

• update ontology decendant mappings (#142) (fb23618)

python-api: v0.1.2

0.1.2 (2024-03-18)

BugFixes

• update README.md for API (f606073)

python-api: v0.1.1

0.1.1 (2024-03-18)

BugFixes

• python-api release version (#131) (3237651)

python-api: v0.1.0

0.1.0 (2024-03-15)

Features

• add data to the python package (#87) (0eb6831)
• add is_valid_term_id method to OntologyParser (#115) (72c2073)
• include license file with python package (#85) (2be3d81)
• refactor ancestry mapping to include distance from descendant node + implement functions to support curated list term mapping (#96) (7fc3562)
• refer to ontology source filenames in ontology_info and return that in get_ontology_download_url (#106) (ff9d826)
• split all_ontology into individual files. (#93) (ead59e5)
• Support getting download link for ontology from source repo (#86) (fd55b76)

Misc

• automate testpypi releases (#118) (b5a1a66)
• clean-up ontology_parser single fetch and bulk fetch methods + account for acceptable non-ontology terms (#112) (2ef7435)
• deps-dev: bump semantic-version from 2.8.5 to 2.10.0 in /api/python (#98) (dfe0b39)

BugFixes

• imports for api (4cd3386)
• update requirements (#114) (9888f3d)

ontology-assets: v0.1.0

0.1.0 (2024-03-15)

Features

• load GH Release Assets for schema version in memory (#72) (58bad0a)
• refactor ancestry mapping to include distance from descendant node + implement functions to support curated list term mapping (#96) (7fc3562)
• refer to ontology source filenames in ontology_info and return that in get_ontology_download_url (#106) (ff9d826)
• release: generate descendant mapping for tissues and cells (#100) (841fddf)
• remove all-ontology.json.gz (83fefd6)
• split all_ontology into individual files. (#93) (ead59e5)

Misc

• update ontology decendant mappings (#117) (48451af)

BugFixes

• lint errors (f5e4583)
• Schema format and validation fixes. (#113) (0465ee7)

v0.0.1

0.0.1 (2024-02-26)

Features

• Add API ontology querying module (68f3168)
• Add API ontology querying module (#39) (239ef2b)
• API: setup python library (211a099)
• API: setup python library (f60f897)
• API: Setup the library for development (1f7ce03)
• data release: add hand curated_lists.py and orphans with comments and a generator s… (#33) (413dc23)
• Define JSON Schemas for ontology data release artifacts (#32) (b23894a)
• fix changelog (0285ef7)
• implement stubbed query functions (334deb5)
• regenerate all_ontology if the schema changes (5f74bfb)
• set version regex for pyton api (3720dab)
• setup Lintes for repo (4a70384)
• Store branch ancestors ("part_of" relationships) in all_ontology.json (80e1f0d)
• Store branch ancestors ("part_of" relationships) in all_ontology.json (#38) (64c2653)
• testing: add testing for ontology-builder (e087eca)
• testing: add testing for ontology-builder (e087eca)
• upload assets on release (81725db)
• upload assets on release (#56) (84a1c5d)

Misc

• add ontology-assets to release (b09c814)
• add ontology-assets to release (04835c0)
• bootstrap release-please (f32db86)
• bootstrap release-please (7d0554f)
• change bootstrap-sha (f2571e8)
• check that pr titles follow conventional commit format (#41) (bd6d842)
• clean-up extract ontology term metadata parsing (b9d2959)
• configure release-please (#40) (879ead2)
• deps: bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder (5466a08)
• deps: bump owlready2 from 0.38 to 0.45 in /tools/ontology-builder (#37) (db3e5c8)
• deps: bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder (98dfba2)
• deps: bump pyyaml from 6.0 to 6.0.1 in /tools/ontology-builder (#36) (72e7e40)
• enable release-please for API and Assets (#55) (9ecda79)
• move curated lists to ontology-assets (#48) (77916df)
• move over all_ontology.json generator script + gha to repo from single-cell-curation (f90fb05)
• move over all_ontology.json generator script + gha to repo from single-cell-curation (#27) (49237a7)
• moving the generated artifacts (c03c8e3)
• refactor all_ontology_generator for cleanliness and modularity (b96c552)
• refactor all_ontology_generator for cleanliness and modularity (b96c552)
• refactor all_ontology_generator for cleanliness and modularity (4384459)
• release 0.0.2 (4972aa2)
• release 0.0.2 (#42) (19079d4)
• release tsmith/release-assets (63b782d)
• release tsmith/release-assets (#57) (6a6b02a)
• remove unused release.yml configs (ce00bef)
• test-release (5f20d18)

BugFixes

• .release-please-manifest.json is valid json (c09f2cc)
• add dependabot.yml (575f371)
• add ontology-assets (8d51dea)
• add ontology-assets (01f504d)
• README.md (d19efeb)
• README.md (1eae21d)
• release pr format (20d9d1d)
• remove root from release-please-config.json (8265b3e)
• test branch (f68622a)
• test branch (fac02bb)
• test release (aab95e8)
• trigger all-ontology g...