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BEAM and differentialGeneTest use multiple cores with cores=1 #524

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nkliutx opened this issue Jan 9, 2025 · 0 comments
Open

BEAM and differentialGeneTest use multiple cores with cores=1 #524

nkliutx opened this issue Jan 9, 2025 · 0 comments

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@nkliutx
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nkliutx commented Jan 9, 2025

I'm running monocle on a linux server, and when I run BEAM and differentialGeneTest, it will use multiple (64) cores to run even if I have set cores to 1, and it increased to 256 when I set cores to 4. I wonder why this happens, and is there a way to limits cores that actually used.

R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 20.04.6 LTS

other attached packages:
[1] ggpointdensity_0.1.0 ComplexHeatmap_2.22.0 AUCell_1.28.0 ggsci_3.2.0 ggalluvial_0.12.5
[6] igraph_2.1.1 monocle_2.34.0 DDRTree_0.1.5 irlba_2.3.5.1 VGAM_1.1-12
[11] Biobase_2.66.0 BiocGenerics_0.52.0 clusterProfiler_4.14.3 data.table_1.16.2 RANN_2.6.2
[16] stringr_1.5.1 RcppParallel_5.1.9 RcppZiggurat_0.1.6 Rcpp_1.0.13-1 plyr_1.8.9
[21] Matrix_1.7-1 magrittr_2.0.3 HiClimR_2.2.1 dplyr_1.1.4 doParallel_1.0.17
[26] iterators_1.0.14 foreach_1.5.2 pheatmap_1.0.12 ggpubr_0.6.0 ggplot2_3.5.1
[31] Seurat_5.1.0 SeuratObject_5.0.2 sp_2.1-4

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