NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AutoAnnotate_Celaref)
export(AutoAnnotate_CellAssign)
export(AutoAnnotate_Garnett)
export(AutoAnnotate_SingleR)
export(AutoAnnotate_scCATCH)
export(BordaRank_MINIEX)
export(PMEThmp)
export(RunCytoTRACE)
export(RunGSEA_plant)
export(RunMetacell)
export(RunMonocle2)
export(RunMonocle3)
export(RunSlingshot)
export(SpecificityRank)
export(ToptargetsofTopregulons)
export(constellationPlot)
export(crossSpecies_integrate)
export(decomposeBulk)
export(enrich_exp_hmp)
export(enrich_exp_scatter)
export(fractionHmp)
export(get_marker_file)
export(get_marker_scCATCH)
export(load_shinyApp)
export(meanExpHmp)
export(processPMET)
export(ras_exp_hmp)
export(ras_exp_scatter)
export(species_percentage)
export(targets_MINIEX)
export(topPairsNet)
export(topRegulons)
export(topRegulons_MINIEX)
export(toptargets)
export(triHmp)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,FeaturePlot)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindIntegrationAnchors)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,IntegrateData)
importFrom(Seurat,NoAxes)
importFrom(Seurat,PrepSCTIntegration)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,SCTransform)
importFrom(Seurat,SelectIntegrationFeatures)
importFrom(SingleCellExperiment,reducedDims)
importFrom(clusterProfiler,GSEA)
importFrom(clusterProfiler,bitr)
importFrom(clusterProfiler,gseGO)
importFrom(clusterProfiler,gseKEGG)
importFrom(dplyr,`%>%`)
importFrom(foreach,`%do%`)
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grid,gpar)
importFrom(grid,unit)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,`E<-`)
importFrom(igraph,`V<-`)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,incident_edges)
importFrom(magrittr,`%<>%`)
importFrom(magrittr,`%>%`)
importFrom(stats,heatmap)
importFrom(stats,setNames)
importFrom(utils,install.packages)
importFrom(utils,read.table)