From 78cc3b7c383148275b0f1e09ff052a07295a93c3 Mon Sep 17 00:00:00 2001 From: Ralf Gabriels Date: Mon, 16 Sep 2024 10:08:22 +0200 Subject: [PATCH] Update README.md Fix URLs to documentation pages --- README.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index cab2c9b..8539fb3 100644 --- a/README.md +++ b/README.md @@ -47,8 +47,7 @@ timsTOF fragmentation and IM2Deep for ion mobility separation. Bruker .d and min files are directly supported through the [timsrust](https://github.com/MannLabs/timsrust) library. Checkout our [preprint](https://doi.org/10.1101/2024.05.29.596400) for more information and the -[TIMS²Rescore documentation](https://ms2rescore.readthedocs.io/en/stable/userguide/tims2rescore) -to get started. +[TIMS²Rescore documentation][tims2rescore] to get started. ## Citing @@ -99,11 +98,11 @@ make a [pull request][pr]! [issues]: https://github.com/compomics/ms2rescore/issues/ [discussions]: https://github.com/compomics/ms2rescore/discussions/ [pr]: https://github.com/compomics/ms2rescore/pulls/ -[desktop]: https://ms2rescore.readthedocs.io/gui.html +[desktop]: https://ms2rescore.readthedocs.io/en/stable/gui/ [desktop-installer]: https://github.com/compomics/ms2rescore/releases/latest -[cli]: https://ms2rescore.readthedocs.io/cli/cli.html -[python-package]: https://ms2rescore.readthedocs.io/api/ms2rescore.html -[docker]: https://ms2rescore.readthedocs.io/installation.html#docker-container +[cli]: https://ms2rescore.readthedocs.io/en/stable/cli/ +[python-package]: https://ms2rescore.readthedocs.io/en/stable/api/ms2rescore/ +[docker]: https://ms2rescore.readthedocs.io/en/stable/installation#docker-container [publication-branch]: https://github.com/compomics/ms2rescore/tree/pub [ms2pip]: https://github.com/compomics/ms2pip [deeplc]: https://github.com/compomics/deeplc @@ -111,3 +110,4 @@ make a [pull request][pr]! [mokapot]: https://mokapot.readthedocs.io/ [psm_utils]: https://github.com/compomics/psm_utils [file-formats]: https://psm-utils.readthedocs.io/en/stable/#supported-file-formats +[tims2rescore]: https://ms2rescore.readthedocs.io/en/stable/userguide/tims2Rescore