From 9a7dea72f34a74e39055e9a41fb6bbe877ae8cac Mon Sep 17 00:00:00 2001 From: Tobias Rausch Date: Wed, 9 Oct 2024 09:38:08 +0200 Subject: [PATCH] alternate alignments --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 2cb1e65..81ff161 100644 --- a/README.md +++ b/README.md @@ -133,7 +133,7 @@ Delly also supports long-reads for SV discovery. Alternate alignments for genome graphs -------------------------------------- -Instead of providing only one input alignment, delly supports now multiple alternate alignments on different linear reference genomes using minimap2 or pan-genome graphs using minigraph. +Instead of providing only one input alignment, delly supports now multiple alternate alignments on different linear reference genomes using [minimap2](https://github.com/lh3/minimap2) or pan-genome graphs using [minigraph](https://github.com/lh3/minigraph). ``` minimap2 -ax map-pb -L chm13.fa sample.fq.gz