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AttributeError: 'AxisArrays' object has no attribute 'X_diffmap' #9

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jaydu1 opened this issue Aug 14, 2020 · 0 comments
Open

AttributeError: 'AxisArrays' object has no attribute 'X_diffmap' #9

jaydu1 opened this issue Aug 14, 2020 · 0 comments

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@jaydu1
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jaydu1 commented Aug 14, 2020

I tied to build the docker from this rep and ran it via dyno. However, errors occur that ''AttributeError: 'AxisArrays' object has no attribute 'X_diffmap''' in the 93 line in run.py

sc.tl.dpt(adata, n_dcs = min(adata.obsm.X_diffmap.shape[1], 10))

I suppose there should be adata.obsm['X_diffmap'] instead of adata.obsm.X_diffmap. After I modify this, it works.
rcannood added a commit that referenced this issue Aug 21, 2020
@rcannood
Apply fix suggested by #9
8e2fe3e
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