diff --git a/.env b/.env index 3f8f1ce..5daf3b5 100644 Binary files a/.env and b/.env differ diff --git a/_targets.R b/_targets.R index aa5172f..d7e8f41 100644 --- a/_targets.R +++ b/_targets.R @@ -802,7 +802,7 @@ data_targets <- tar_plan( tar_target(ndvi_anomalies_lagged, lag_data(data_files = ndvi_anomalies, lag_intervals, model_dates_selected, - overwrite = TRUE, + overwrite = parse_flag("OVERWRITE_NDVI_ANOMALIES_LAGGED"), lagged_data_directory = ndvi_anomalies_lagged_directory, basename_template = "ndvi_anomalies_lagged_{model_dates_selected}.gz.parquet", ndvi_anomalies_lagged_AWS), # Enforce dependency @@ -817,32 +817,32 @@ data_targets <- tar_plan( error = "null"), # Get lagged weather data - tar_target(nasa_weather_transformed_lagged_directory, - create_data_directory(directory_path = "data/nasa_weather_transformed_lagged")), + tar_target(weather_anomalies_lagged_directory, + create_data_directory(directory_path = "data/weather_anomalies_lagged")), - tar_target(nasa_weather_transformed_lagged_AWS, AWS_get_folder(nasa_weather_transformed_lagged_directory, - nasa_weather_transformed_historical_means, # Enforce dependency - model_dates_selected), # Enforce dependency + tar_target(weather_anomalies_lagged_AWS, AWS_get_folder(weather_anomalies_lagged_directory, + nasa_weather_transformed_historical_means, # Enforce dependency + model_dates_selected), # Enforce dependency error = "null", cue = tar_cue("always")), # Enforce dependency - tar_target(nasa_weather_transformed_lagged, lag_data(nasa_weather_transformed, - lag_intervals, - model_dates_selected, - nasa_weather_transformed_lagged_directory, - overwrite = TRUE, - nasa_weather_transformed_lagged_AWS), # Enforce dependency + tar_target(weather_anomalies_lagged, lag_data(weather_anomalies, + lag_intervals, + model_dates_selected, + overwrite = parse_flag("OVERWRITE_WEATHER_ANOMALIES_LAGGED"), + lagged_data_directory = weather_anomalies_lagged_directory, + basename_template = "weather_anomalies_lagged_{model_dates_selected}.gz.parquet", + weather_anomalies_lagged_AWS), # Enforce dependency pattern = map(model_dates_selected), error = "null", format = "file", repository = "local"), # Next step put ndvi_historical_means files on AWS. - tar_target(nasa_weather_transformed_lagged_AWS_upload, AWS_put_files(nasa_weather_transformed_lagged, - nasa_weather_transformed_lagged_directory), + tar_target(weather_anomalies_lagged_AWS_upload, AWS_put_files(weather_anomalies_lagged, + weather_anomalies_lagged_directory), error = "null"), - tar_target(africa_full_model_data_directory, create_data_directory(directory_path = "data/africa_full_model_data")), diff --git a/_targets/meta/meta b/_targets/meta/meta index 072c844..d39a9c3 100644 --- a/_targets/meta/meta +++ b/_targets/meta/meta @@ -1789,7 +1789,6 @@ modis_ndvi_transformed_directory|stem|460fab12fdd2135a|b1974624b45646de|b4f5e9cd 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ndvi_anomalies_lagged_cfa46357c5422e85|branch|cbf05da5862f1d87|e0f885fdbb96b3a2|8502e3b44531bafe|1074302699|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2005-01-14.gz.parquet|t20070.0244708143s|2d632fa2f3607102|8595901|file|local|vector|ndvi_anomalies_lagged||7.015|| ndvi_anomalies_lagged_a0bd67ef9723e49c|branch|ffea7ac1e32188fd|e0f885fdbb96b3a2|8502e3b44531bafe|1772390797|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2005-01-08.gz.parquet|t20070.0245086188s|0bda991409694937|4569682|file|local|vector|ndvi_anomalies_lagged||3.011|| ndvi_anomalies_lagged_e4efa0d22235646e|branch|e8fd13f2154848a2|e0f885fdbb96b3a2|8502e3b44531bafe|-1858607252|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2005-02-19.gz.parquet|t20070.0246535251s|5e987778bfc3c967|16742904|file|local|vector|ndvi_anomalies_lagged||12.132|| @@ -4253,200 +4225,6 @@ ndvi_anomalies_lagged_8bad23692ce5aa14|branch|1c987116a2063bf0|e0f885fdbb96b3a2| ndvi_anomalies_lagged_f479abb1f77b6614|branch|6fd57abe1ee8fdae|e0f885fdbb96b3a2|8502e3b44531bafe|-920299091|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2011-01-11.gz.parquet|t20070.0735661677s|85348ad05c7fb057|38047427|file|local|vector|ndvi_anomalies_lagged||26.209|| ndvi_anomalies_lagged_d9bd259e77fde9b7|branch|ac76c2b184427194|e0f885fdbb96b3a2|8502e3b44531bafe|545480474|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2011-01-19.gz.parquet|t20070.0739031797s|85d0fd5e632ae3fd|42075759|file|local|vector|ndvi_anomalies_lagged||28.613|| ndvi_anomalies_lagged_fc10391f13591621|branch|a8b429d9c261d06d|e0f885fdbb96b3a2|8502e3b44531bafe|1099021601|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2011-02-27.gz.parquet|t20070.0742418961s|0044e14aaed7e289|38796175|file|local|vector|ndvi_anomalies_lagged||28.81|| -transform_raster|function|0dc0c7d04248eec3||||||||||||||| -download_modis_ndvi|function|1984481a2abc5759||||||||||||||| -preprocess_nasa_weather|function|5d547c41ad4924d9||||||||||||||| -file_partition_duckdb|function|51716bee87049d19||||||||||||||| -download_nasa_weather|function|f7dea44b09e73ce8||||||||||||||| -set_model_dates|function|728230d262306d87||||||||||||||| -create_ndvi_date_lookup|function|711d97064d7ed0bd||||||||||||||| -submit_modis_ndvi_task_request|function|25a7f129e52c207b||||||||||||||| -get_grib_metadata|function|3b1e629e6e50def5||||||||||||||| -update_env_key|function|3a01617a95158f19||||||||||||||| -f|object|afac86fc13d4ff24||||||||||||||| -transform_ndvi|function|75ec6ed03f9e717d||||||||||||||| -tar_get_error|function|3c106aa142d6c9a9||||||||||||||| -get_ecwmf_tasks|function|55ff5648f84bccbb||||||||||||||| -delete_appears_task|function|51491fbb0277962e||||||||||||||| -get_task_status_overview|function|b020881e0d2956c8||||||||||||||| -soil_download|function|270c5d678bdb0337||||||||||||||| -get_sentinel_ndvi_token|function|32daee882b8d80e8||||||||||||||| -data_targets|object|d51caa966d9c7f42||||||||||||||| -get_sentinel_ndvi_api_parameters|function|e5a59469e2ee5bda||||||||||||||| -file_partition|function|4225cbbec8bc1616||||||||||||||| -preprocess_glw|function|bb12183281d32119||||||||||||||| -get_glw|function|e2b086b7b6fe8f72||||||||||||||| -get_glw_data|function|d7d08b8ceb1608e6||||||||||||||| -get_wahis_rvf_controls_raw|function|cbfc96d406ecbac8||||||||||||||| -parse_flag|function|ef0930971f99fab1||||||||||||||| -rolling_box|function|75f223c9843a2041||||||||||||||| -AWS_get_folder|function|55fffed1bc2bedc5||||||||||||||| -preprocess_soil|function|7688e77bef098270||||||||||||||| -submit_modis_ndvi_bundle_request|function|23f22c39f6bedf66||||||||||||||| -.Random.seed|object|2fba16ca98ff2d88||||||||||||||| -make_south_africa_outbreaks_timeline|function|d9a26b0369bd3c5f||||||||||||||| -col_na|function|354cc7c01998e895||||||||||||||| -deploy_targets|object|718ad17f619b9b2f||||||||||||||| 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-get_wahis_rvf_outbreaks_raw|function|65f46a23746e3e85||||||||||||||| -calculate_ndvi_anomalies|function|86f6558cdfb51e20||||||||||||||| -get_country_bounding_boxes|function|ebbb0294dad6095f||||||||||||||| -combine_weights|function|a2766edf76d70578||||||||||||||| -test_targets|object|718ad17f619b9b2f||||||||||||||| -get_row_counts|function|037c9754414bd5ed||||||||||||||| -get_current_task_status|function|8dcaab7e1c97c192||||||||||||||| -aws_s3_upload_single_type|function|1a54b513a98e58f9||||||||||||||| -lag_data|function|1135399477bbfdc8||||||||||||||| -create_africa_polygon|function|cf9eeb8e3a6dd8ad||||||||||||||| -create_country_polygons|function|d55b8c17ed672bf5||||||||||||||| -download_modis_ndvi_delete|function|33709e5ea023c37c||||||||||||||| -open_and_join|function|0eab2d99e4821846||||||||||||||| -set_ecmwf_api_parameter|function|5fdc58c184d4ff29||||||||||||||| -create_raster_template_plot|function|756a38df4230b5db||||||||||||||| 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modis_ndvi_token|stem|f5d3100044097e39|c9651bea035be41f|d768f2be884267f9|-1215548249||t20070.0812297463s|d71cb223d0e1842f|169|qs|local|vector|||0.276|| sentinel_ndvi_token_file|stem|b6225429bfd90035|22a64a2def2333ed|dc6fe4ca1c9ada48|224257411||t20070.0812419385s|ba51273727d9db07|90|qs|local|vector|||0.913|| modis_ndvi_task_id_continent_b8398cf6a182f266|branch|2d4bdd0fef2ee351|8015e690c75b01f0|5c24664d56b12887|-800865216||t20070.0812526807s|2eb0407b4b608bfc|304|qs|local|vector|modis_ndvi_task_id_continent||0.571|| @@ -4673,9 +4451,240 @@ ndvi_anomalies_lagged_47fbf41e582cb026|branch|0b9f51a85ebf6c5c|e0f885fdbb96b3a2| ndvi_anomalies_lagged_de72968a6ebde4db|branch|fc0750e6206bebd3|e0f885fdbb96b3a2|8502e3b44531bafe|884381022|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2019-04-16.gz.parquet|t20070.1505342339s|195fd9d87f53c3a8|46750720|file|local|vector|ndvi_anomalies_lagged||39.698|| ndvi_anomalies_lagged_ef77c1c0912e1f7a|branch|0c0437020dd2e103|e0f885fdbb96b3a2|8502e3b44531bafe|-1644017761|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2019-05-04.gz.parquet|t20070.1510493908s|a676f4e2eafc4d4e|48591930|file|local|vector|ndvi_anomalies_lagged||44.152|| ndvi_anomalies_lagged_0bfd046ace736196|branch|b5ae5bc502d3e6c1|e0f885fdbb96b3a2|8502e3b44531bafe|659966108|data/ndvi_anomalies_lagged/ndvi_anomalies_lagged_2019-05-02.gz.parquet|t20070.1515229331s|e903b747ee6cd15d|47595551|file|local|vector|ndvi_anomalies_lagged||40.597|| -ndvi_anomalies_lagged_8f45721225f672f3|branch||e0f885fdbb96b3a2|8502e3b44531bafe|-83204829||t20070.151921296s||0|null|local|vector|ndvi_anomalies_lagged||34.127||IOError Error writing bytes to file. Detail errno 28 No space left on device ndvi_anomalies_lagged_8f45721225f672f3|branch|error|e0f885fdbb96b3a2|8502e3b44531bafe|-83204829||t20070.1519213052s||0|null|local|vector|ndvi_anomalies_lagged||34.127||IOError Error writing bytes to file. Detail errno 28 No space left on device -ndvi_anomalies_lagged_bcd035c8a9686780|branch||e0f885fdbb96b3a2|8502e3b44531bafe|977081036||t20070.1523030803s||0|null|local|vector|ndvi_anomalies_lagged||32.578||IOError Error writing bytes to file. Detail errno 28 No space left on device ndvi_anomalies_lagged_bcd035c8a9686780|branch|error|e0f885fdbb96b3a2|8502e3b44531bafe|977081036||t20070.1523031171s||0|null|local|vector|ndvi_anomalies_lagged||32.578||IOError Error writing bytes to file. Detail errno 28 No space left on device -ndvi_anomalies_lagged_c9d73bf78a91f33e|branch||e0f885fdbb96b3a2|8502e3b44531bafe|812091739||t20070.1526334584s||0|null|local|vector|ndvi_anomalies_lagged||28.217||IOError Error writing bytes to file. Detail errno 28 No space left on device ndvi_anomalies_lagged_c9d73bf78a91f33e|branch|error|e0f885fdbb96b3a2|8502e3b44531bafe|812091739||t20070.1526334651s||0|null|local|vector|ndvi_anomalies_lagged||28.217||IOError Error writing bytes to file. Detail errno 28 No space left on device +weather_anomalies_lagged_cfa46357c5422e85|branch|error|3897e77fedb8c5d1|93bfc01bd677a144|598369132||t20070.2002455996s||0|null|local|vector|weather_anomalies_lagged||0.013||object weather_anomalies_lagged_directory not found +weather_anomalies_lagged_a0bd67ef9723e49c|branch|error|3897e77fedb8c5d1|93bfc01bd677a144|-392250185||t20070.2002471128s||0|null|local|vector|weather_anomalies_lagged||0.004||object weather_anomalies_lagged_directory not found +weather_anomalies_lagged_e4efa0d22235646e|branch|error|3897e77fedb8c5d1|93bfc01bd677a144|2101992635||t20070.2002486182s||0|null|local|vector|weather_anomalies_lagged||0.003||object weather_anomalies_lagged_directory not found +weather_anomalies_lagged_6576345f18f461e8|branch|error|3897e77fedb8c5d1|93bfc01bd677a144|-1778673047||t20070.2002500994s||0|null|local|vector|weather_anomalies_lagged||0.004||object weather_anomalies_lagged_directory not found 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