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Eugene Katrukha edited this page Aug 3, 2022 · 6 revisions

ROI manager/Tracing

  • F adds a new point. In point mode just adds a point ROI to the list. In polyline mode, if a polyline ROI is already selected in the list, adds a point to the selected ROI/continues polyline. If nothing is selected, creates new polyline (use H to deselect). The same in semi-auto curve trace mode (check Semi-auto tracing page for more details).
  • G in polyline / semi-auto trace mode removes last point added to curve.
  • H deselect ROI/stop tracing (same as button).
  • Y reversed ends of polyline/semi-auto trace ROIs, making another end active.
  • T in semi-auto trace mode moves TraceBox, so it is positioned around last added point.
  • R in semi-auto trace mode connects two points with a straight line, rather than a trace.
  • V in semi-auto trace mode starts a new trace at the clicked location.

Navigation

  • D - zoom in to a local volume with a size specified in Settings
  • C - zoom out and fit dataset to screen
  • 1 - zoom out and align XY plane with screen view
  • 2 - zoom out and align YZ plane with screen view
  • S - BDV dialog brighness/contrast and LUTs of sources
  • F6 - BDV dialog list of sources

Developed in Cell Biology group of Utrecht University.
Check out Updates history. The plugin and this wiki are under constant development.
E-mail for any questions, feedback, errors or suggestion or tag @ekatrukha at image.sc forum.

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