_pkgdown.yml

template:
  bootstrap: 5
  light-switch: yes
  math-rendering: mathjax
authors:
  Erik Volz:
    href: https://profiles.imperial.ac.uk/e.volz
  Fabricia F. Nascimento:
    href: https://thednainus.wordpress.com/me/
  footer:
    roles: ctb
    text: Website developed by
navbar:
  structure:
    left:
    - intro
    - reference
    - articles
    - tutorials
    - news
    right:
    - search
    - github
    - lightswitch
  components:
    reference:
      text: Functions
      href: reference/index.html
    intro:
      text: Get started
      href: articles/phydynR.html
    articles:
      text: Tutorials
      menu:
      - text: Estimating transmission rate using the SIR model
        href: articles/sir_model.html
      - text: Estimating HIV transmission rates
        href: articles/HIV_epidemics.html
      - text: Simulating genealogies with an epidemiological coalescent model
        href: articles/simulate_genealogies.html
      - text: HIV Senegal Model
        href: articles/SenegalHIVmodel.html
reference:
- title: Functions included in phydynR
  contents:
  - DatedTree
  - build.demographic.process
  - show.demographic.process
  - colik
  - colik.pik.fgy
  - sim.co.tree
url: http://emvolz-phylodynamics.github.io/phydynR/