From 4cfdf4f47f7ebcb82aa8776209e77481d0cdab26 Mon Sep 17 00:00:00 2001 From: Marcus Fedarko Date: Sun, 29 Dec 2024 02:40:59 -0500 Subject: [PATCH] DOC: words are hard --- README.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index f3f1c18..5c7c44b 100644 --- a/README.md +++ b/README.md @@ -215,11 +215,10 @@ for computing dot plots, were based on Chapter 6 of (Compeau & Pevzner). The idea of using suffix arrays to speed up dot plot computation is not new; it -is also implemented in -[Gepard](https://cube.univie.ac.at/gepard) +is also used in [Gepard](https://cube.univie.ac.at/gepard) ([Krumsiek _et al._ 2007](https://academic.oup.com/bioinformatics/article/23/8/1026/198110)). (Eventually I moved from directly using suffix arrays to just using the -`pydivsufsort.common_substrings()` algorithm, at least as the default. Although +`pydivsufsort.common_substrings()` algorithm, at least as the default algorithm; although that is still [using a suffix array under the hood](https://github.com/louisabraham/pydivsufsort/blob/2869020c26022e0f88592e85cdc480856e9856d5/pydivsufsort/wonderstring.py#L128-L157) :) ### Dependencies