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run_archive_esm_uwe_log.sh
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#!/bin/bash
#
# archive_esm.sh
##########################################################################
# Setup for mistral (SLURM)
#
#SBATCH --job-name=archive_esm
#SBATCH --partition=shared
#SBATCH --ntasks=1
#SBATCH --mem-per-cpu=1280
##SBATCH --partition=compute
##SBATCH --exclusive
##SBATCH --nodes=1
##SBATCH --tasks-per-node=1
##SBATCH --cpus-per-task=1
##SBATCH --time=03:00:00
#SBATCH --output=archive_esm.o%j
#SBATCH --error=archive_esm.o%j
#SBATCH --mail-type=FAIL
#SBATCH [email protected]
#SBATCH --account=bm0948
ulimit -s unlimited
###########################################################################
#prj_id="mh0110"
#esm_id="mpiesm-flo-dev"
#exp_id="uwe0010"
#firstyear=1900
#lastyear=2899
#exp_id="uwe0011"
#firstyear=2700
#lastyear=2899
#exp_id="uwe0012"
#firstyear=2700
#lastyear=3399
#esm_id="mpiesm_nohamocc"
# 2999 without run and store
#exp_id="uwe0013"
#firstyear=2700
#lastyear=2998
#exp_id="uwe0014"
# 2999 without run and store
#firstyear=2700
#lastyear=2998
# ---- Mandatory user spezified overall environment ----------------------#
# Experiment's project ID, MPIESM ID, and experiment ID
# are used for default directories, see user spezified root of
# experiment's data, local and remote tarballs, local climatologies, and
# temporary data
# if no defaults used, please set dummy data
prj_id="mh0110"
esm_id="mpiesm_nohamocc"
exp_id="uwe0013"
# Start up and last year for processing (archiving, climatologies, ...)
firstyear=2700
lastyear=2998
#-------------------------------------------------------------------------#
# ---- User spezified root directories -----------------------------------#
# Directory of temporary data and processing
# default: "/scratch/m/${USER}/tmp/${exp_id}_${firstyear}_${lastyear}_$$"
tmp_dir="/scratch/m/${USER}/tmp/${exp_id}_${firstyear}_${lastyear}_$$"
# Root directory of experiment
# default: "/work/${prj_id}/${USER}/${esm_id}/experiments/${exp_id}"}
exp_dir="/work/${prj_id}/m211003/${esm_id}/experiments/${exp_id}"
# Root directory of local tarballs
# default: "/work/${prj_id}/${USER}/${esm_id}/experiments/tars/${exp_id}"}
tar_dir="/scratch/m/${USER}/tmp/${esm_id}/experiments/tars/${exp_id}"
# Root directory of tarballs on archive
# default: "${prj_id}/${USER}/${esm_id}/${exp_id}"
#arc_dir="bm0948/m211003/${esm_id}/${exp_id}"
arc_dir="bm0948/${USER}/${esm_id}/${exp_id}"
# Root directory to store climatologies
# default: "/work/${prj_id}/${USER}/${esm_id}/experiments/means/${exp_id}"}
cli_dir="/scratch/m/${USER}/tmp/${esm_id}/experiments/means/${exp_id}"
#-------------------------------------------------------------------------#
# ---- User spezified processing environment -----------------------------#
# Enable verbose log
# default: 0 (disabled)
#verbose=2
# Increment of time period
#incrementyear=10
# Enable climatologies
# default: true
lclimat=false
# Enable archiving raw data and climatologies
# default: true
larchiv_data=false
# Enable archiving restart data
# default: true
larchiv_restart=false
# Enable archiving logging data
# default: true
#larchiv_log=false
# Enable processing of atmosphere/ECHAM data
# default: true
#latmos=false
# Enable processing of land/JSBACH data
# default: true
#lland=false
# Enable processing of ocean/MPIOM data
# default: true
#locean=false
# Enabel processing ocean's biogeochemical/HAMOCC data
# default: true
#logbc=false
# Enabel processing coupler data
# default: true
#lcoup=false
# Enabel processing logging data
# default: true
#llogg=false
#-------------------------------------------------------------------------#
# ---- Set data types for climatology processing -------------------------#
# Processing daily means
dm="dm"
# monthly means
mm="mm"
# yearly means
ym="ym"
# no processing desired
no="none"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for atmosphere raw and restart data #
# default:
#atmos_dat="accw_ ATM_mm_ BOT_mm_ co2_ co2_mm_ echam_"
#atmos_dat_type="${mm} ${mm} ${mm} ${no} ${mm} ${no}"
#atmos_rst="accw_ co2_ echam_"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for land raw and restart data #
# default
#land_dat="jsbach_ jsbach_mm_ land_ land_mm_ surf_ surf_mm_ \
# veg_ veg_mm_ yasso_ yasso_mm_"
#land_dat_type="${no} ${mm} ${no} ${mm} ${no} ${mm} ${no} ${mm} ${no} ${mm}"
#land_rst="hd_ jsbach_ surf_ veg_ yasso_"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for ocean raw and restart data #
# default
#ocean_dat="data_2d_mm_ data_3d_mm_ data_moc_mm_ monitoring_ym_ \
# timeser_mm_"
#ocean_dat_type="${mm} ${mm} ${mm} ${ym} ${mm}"
#ocean_rst="mpiom_"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for ocean raw and restart data #
# default
#obgs_dat="co2_ data_2d_mm_ data_3d_ym_ data_eu_mm_ data_sedi_ym_ \
# monitoring_ym_"
#obgs_dat_type="${dm} ${mm} ${ym} ${mm} ${ym} ${ym}"
#obgc_rst="hamocc_"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for coupler restart data #
# default
#coupl_rst="flxatmos_ sstocean_"
#-------------------------------------------------------------------------#
# ---- User spezified data indicators of file patterns -------------------#
# for logging data #
# default
#log_dat="store_"
#-------------------------------------------------------------------------#
# ---- Run processing ----------------------------------------------------#
/home/zmaw/m300465/bin/archive_esm.sh \
--project_id ${prj_id} \
--mpiesm_id ${esm_id} \
--experiment_id ${exp_id} \
--firstyear ${firstyear} \
--lastyear ${lastyear} \
--incrementyear ${incrementyear} \
--lclimatologies ${lclimat} \
--larchive_data ${larchiv_data} \
--larchive_restart ${larchiv_restart} \
--larchive_log ${larchiv_log} \
--latmosphere ${latmos} \
--lland ${lland} \
--locean ${locean} \
--lobgc ${logbc} \
--lcoupler ${lcoup} \
--llog ${llogg} \
--atmosphere_data_pat ${atmos_dat} \
--atmosphere_data_type ${atmos_dat_type} \
--atmosphere_restart_data_pat ${atmos_rst} \
--land_data_pat ${land_dat} \
--land_data_type ${land_dat_type} \
--land_restart_data_pat ${land_rst} \
--ocean_data_pat ${ocean_dat} \
--ocean_data_type ${ocean_dat_type} \
--ocean_restart_data_pat ${ocean_rst} \
--obgc_data_pat ${obgs_dat} \
--obgc_data_type ${obgs_dat_type} \
--obgc_restart_data_pat ${obgc_rst} \
--coupler_restart_data_pat ${coupl_rst} \
--log_data_pat ${log_dat} \
--tmp_path ${tmp_dir} \
--experiment_path ${exp_dir} \
--local_archive_path ${tar_dir} \
--remote_archive_path ${arc_dir} \
--local_climatologies_path ${cli_dir} \
--verbose ${verbose}
#-------------------------------------------------------------------------#