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PCR INDEL model #28

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mp15 opened this issue Dec 18, 2019 · 0 comments
Open

PCR INDEL model #28

mp15 opened this issue Dec 18, 2019 · 0 comments

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@mp15
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mp15 commented Dec 18, 2019

Hi,

I notice that this pipeline doesn't specify a PCR indel model, though in your manual for HaplotypeCaller you state in big bold capitals "VERY IMPORTANT: when using PCR-free sequencing data we definitely recommend setting this argument to NONE.". Was this an oversight?
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