Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New gorule_0000065 : report annotations to terms in subset 'gocheck_obsoletion_candidate' #2392

Open
pgaudet opened this issue Dec 11, 2024 · 4 comments
Assignees

Comments

@pgaudet
Copy link
Contributor

pgaudet commented Dec 11, 2024

Hello @mugitty

We need a new GORULE, similar to gorule_0000008 (No annotations should be made to uninformative high level terms), but using the subset 'gocheck_obsoletion_candidate' instead.

pgaudet added a commit that referenced this issue Dec 11, 2024
@pgaudet
Copy link
Contributor Author

pgaudet commented Dec 11, 2024

Proposed rule is here: https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000065.md

@mugitty this should be easy? because it can be modeled on gorule_0000008

Thanks, Pascale

mugitty added a commit to biolink/ontobio that referenced this issue Dec 13, 2024
mugitty added a commit to biolink/ontobio that referenced this issue Dec 14, 2024
mugitty added a commit that referenced this issue Dec 16, 2024
mugitty added a commit to geneontology/pipeline that referenced this issue Dec 16, 2024
mugitty added a commit to geneontology/pipeline that referenced this issue Dec 16, 2024
mugitty added a commit to geneontology/pipeline that referenced this issue Dec 17, 2024
@mugitty
Copy link
Contributor

mugitty commented Dec 20, 2024

@pgaudet, Gorule 65 has been implemented and results can be viewed in http://skyhook.berkeleybop.org/go-site-2392-gorule-0000065-implement-rule/reports/gorule-report.html

@pgaudet
Copy link
Contributor Author

pgaudet commented Dec 20, 2024

Brilliant !! This seems to be working correctly. Can you make sure this gets into the production code at the next release?

Thanks, Pascale

@kltm
Copy link
Member

kltm commented Dec 23, 2024

This will go out in the next snapshot.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Development

No branches or pull requests

3 participants