From 81b191d9a317b1d842592a85e42562467f219dd7 Mon Sep 17 00:00:00 2001
From: Samuel Lampa <samuel.lampa@scilifelab.se>
Date: Wed, 13 Dec 2023 13:47:08 +0100
Subject: [PATCH] Fix #238: Rename imports from get_seqrun to get_seqrun_meta

---
 workflows/escherichia_coli.nf           | 2 +-
 workflows/klebsiella_pneumoniae.nf      | 2 +-
 workflows/mycobacterium_tuberculosis.nf | 2 +-
 workflows/staphylococcus_aureus.nf      | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/workflows/escherichia_coli.nf b/workflows/escherichia_coli.nf
index bf32002d..7c7f550f 100644
--- a/workflows/escherichia_coli.nf
+++ b/workflows/escherichia_coli.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'
diff --git a/workflows/klebsiella_pneumoniae.nf b/workflows/klebsiella_pneumoniae.nf
index afe10255..97764b72 100644
--- a/workflows/klebsiella_pneumoniae.nf
+++ b/workflows/klebsiella_pneumoniae.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'
diff --git a/workflows/mycobacterium_tuberculosis.nf b/workflows/mycobacterium_tuberculosis.nf
index 403d89f8..0d60f19d 100644
--- a/workflows/mycobacterium_tuberculosis.nf
+++ b/workflows/mycobacterium_tuberculosis.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                  } from '../methods/get_meta'
-include { get_seqrun                } from '../methods/get_seqrun'
+include { get_seqrun_meta           } from '../methods/get_seqrun_meta'
 include { bracken                   } from '../nextflow-modules/modules/bracken/main'
 include { copy_to_cron              } from '../nextflow-modules/modules/cron/main'
 include { create_analysis_result    } from '../nextflow-modules/modules/prp/main'
diff --git a/workflows/staphylococcus_aureus.nf b/workflows/staphylococcus_aureus.nf
index 7ce9d295..45d8f4a0 100644
--- a/workflows/staphylococcus_aureus.nf
+++ b/workflows/staphylococcus_aureus.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'