g4t_galaxy.yml

- hosts: galaxy_hosts
  become: true
  handlers:
    - name: restart galaxy
      debug:
        msg: "Not yet available"

  pre_tasks:
#
#    - name: Copy custom_tool_conf xml file
#      copy:
#        src: custom_tool_conf.xml
#        dest: "{{ galaxy_mutable_config_dir }}"
#        owner: galaxy
#        group: users
#      become: yes

    - name: Only update apt cache if the last one is more than 3600 seconds ago
      apt:
        update_cache: yes
        cache_valid_time: 3600

    - name: Install dependencies
      apt:
        pkg:
          - git
          - make
          - virtualenv
        state: present


  roles:
    - role: common
    - role: galaxyproject.galaxy

  post_tasks:
    - name: Create log directory
      file:
        state: "{{ item.state }}"
        path: "{{ item.path }}"
        owner: "{{ galaxy_user.name }}"
        group: "{{ galaxy_user.name }}"
      with_items:
        - {path: "{{ galaxy_mutable_data_dir }}/log", state: "directory" }
        - {path: "{{ galaxy_mutable_data_dir }}/tool-data", state: "directory" }

    - name: Copy config files
      template:
        src: "{{ item.src }}"
        dest: "{{ item.dest }}"
        mode: 0644
      with_items:
        - { src: "tool_data_table_conf.xml.j2", dest: "{{ galaxy_mutable_config_dir }}/tool_data_table_conf.xml" }
        - { src: "shed_tool_conf.xml.j2", dest: "{{ galaxy_shed_tool_conf_file }}" }