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main.tex
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\documentclass[twoside]{report}
\usepackage{color}
\usepackage{amsmath,amsfonts}
\usepackage{graphicx}
\usepackage[pdftex,hypertexnames=false,
colorlinks=true,
pdfstartview=FitV,
linkcolor=black,
citecolor=black,
urlcolor=black,
pdfpagelabels,
naturalnames=true]{hyperref}
\newcommand\myurl[2]{\url{#1}} % Strip periods after URLs
\newcommand{\red}[1]{{\color{red} #1}}
\newcommand{\todo}[1]{\textbf{TODO: #1}}
\newcommand{\software}[1]{\texttt{#1}}
\newcommand{\libMesh}{\software{libMesh}}
\newcommand{\GRINS}{\software{GRINS}}
\newcommand{\FEMSystem}{\software{FEMSystem}}
\newcommand{\bx}{\boldsymbol{x}}
\newcommand{\bu}{\boldsymbol{u}}
\newcommand{\bv}{\boldsymbol{v}}
\newcommand{\bn}{\boldsymbol{n}}
\newcommand{\bg}{\boldsymbol{g}}
\newcommand{\bI}{\boldsymbol{I}}
\begin{document}
\author{Paul T. Bauman \and Roy H. Stogner}
\title{GRINS Multiphysics Framework:\\
Theory Documentation}
\maketitle
\tableofcontents
\chapter{Notation}
\input{notation}
\chapter{Boussinesq Buoyancy}
\chapter{Elastic Cable}
\chapter{Elastic Membrane}
\chapter{Convective Heat Transfer}
\chapter{Incompressible Navier-Stokes}
\chapter{Incompressible Navier-Stokes Stabilization}
\section{``Adjoint'' Stabilization}
\section{``SPGSM'' Stabilization}
\chapter{Low Mach Navier-Stokes}
\input{low_mach_navier_stokes}
\chapter{Low Mach Navier-Stokes Stabilization}
\section{``Adjoint'' Stabilization}
\section{``SPGSM'' Stabilization}
\chapter{Reacting Low Mach Navier-Stokes}
\chapter{Reacing Low Mach Navier-Stokes Stabilization}
\section{``Adjoint'' Stabilization}
\section{``SPGSM'' Stabilization}
\chapter{Stokes}
\bibliographystyle{abbrv}
\bibliography{refs}
\end{document}