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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="description" content="A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles">
<meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1">
<title>Seten</title>
<link rel="shortcut icon" href="assets/img/favicon.png" type="image/png">
<link rel="stylesheet" href="assets/css/libs/bootstrap.min.css" charset="utf-8">
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<link rel="stylesheet" href="assets/css/app.css" charset="utf-8">
</head>
<body>
<div class="header">
<div class="container">
<h1>Seten</h1>
<p>
A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles
</p>
</div>
</div>
<nav class="navbar navbar-inverse navbar-static-top">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Seten</a>
</div>
<div id="navbar" class="collapse navbar-collapse">
<ul class="nav navbar-nav">
<li class="active"><a href="index.html"><i class="fa fa-home"></i> Start</a></li>
<li><a href="tutorial.html"><i class="fa fa-question-circle"></i> Tutorial</a></li>
<li><a href="docs.html"><i class="fa fa-book"></i> Docs</a></li>
<li><a href="contact.html"><i class="fa fa-envelope"></i> Contact</a></li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/gungorbudak/seten" title="GitHub page for Seten web interface" target="_blank">
<i class="fa fa-github"></i> GitHub
</a>
</li>
<li>
<a href="https://github.com/gungorbudak/seten-cli" title="GitHub page for Seten command line interface" target="_blank">
<i class="fa fa-terminal"></i> Seten CLI
</a>
</li>
</ul>
</div>
<!--/.nav-collapse -->
</div>
</nav>
<div class="container">
<h2>Start</h2>
<hr>
<p>
Browse your BED file with peaks scored and select your gene set collections of interest or explore precomputed gene set associations for RBPs from CLIPdb and ENCODE projects to start with Seten.
</p>
<div class="container-app"></div>
</div>
<div class="container">
<div class="panel panel-success">
<div class="panel-heading"><h3 class="panel-title">Publication</h3></div>
<div class="panel-body">
<p>Please cite Seten in your publications as:</p>
<p>Budak, G., Srivastava, R., & Janga, S. C. (2017). <a href="https://rnajournal.cshlp.org/content/23/6/836.short" target="_blank">Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.</a> <i>RNA</i>, 23(6), 836-846.</p>
</div>
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</div>
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<div class="container">
<span>
Seten: A tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles
</span>
</div>
</div>
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