diff --git a/.flake8 b/.flake8
deleted file mode 100644
index eb843e2..0000000
--- a/.flake8
+++ /dev/null
@@ -1,8 +0,0 @@
-[flake8]
-max-line-length = 88
-extend-ignore = E203, W503
-exclude = .git, docs, *.pyc, dist
-format = black
-show-source = True
-doctests = True
-statistics = True
\ No newline at end of file
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index a64a924..4bac5b4 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -10,8 +10,8 @@ jobs:
       fail-fast: false
       max-parallel: 2
       matrix:
-        python-version: ["3.8", "3.9", "3.10"]
-        poetry-version: ["1.2.0a2"]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        poetry-version: ["1.8.3"]
         os: [ubuntu-latest, macos-latest, windows-latest]
     runs-on: ${{ matrix.os }}
     steps:
@@ -25,8 +25,8 @@ jobs:
           poetry-version: ${{ matrix.poetry-version }}
       - name: Poetry install
         run: poetry install
-      - name: Lint with flake8
-        run: poetry run flake8
+      - name: Lint with ruff
+        run: poetry run ruff check
       - name: Run test and report coverage with pytest/coverage/coveralls
         env:
           COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 3e39b74..f74c156 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -33,7 +33,7 @@ jobs:
       - name: Set up poetry
         uses: abatilo/actions-poetry@v2.0.0
         with:
-          poetry-version: "1.2.0a2"
+          poetry-version: "1.8.3"
 
       - name: Poetry install
         run: poetry install
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index ed3977c..a057ba7 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -1,6 +1,7 @@
 Deploying to pypi:
 
 ```
+poetry check
 poetry version <major,minor,patch>
 poetry run coverage run
 poetry run coverage report
diff --git a/docs/examples/ontology.ipynb b/docs/examples/ontology.pct.ipynb
similarity index 99%
rename from docs/examples/ontology.ipynb
rename to docs/examples/ontology.pct.ipynb
index 24c8488..48f7cc8 100644
--- a/docs/examples/ontology.ipynb
+++ b/docs/examples/ontology.pct.ipynb
@@ -1,8 +1,16 @@
 {
  "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "31d1a617-74a2-4af1-a450-4b60382d70c6",
+   "metadata": {},
+   "source": [
+    "This notebook shows how to work with biological ontologies such as the sequence ontology or the gene ontology."
+   ]
+  },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 2,
    "id": "fa531cea-9719-4b3e-81bf-3e37a610f9a1",
    "metadata": {},
    "outputs": [
@@ -12,12 +20,13 @@
        "'0.0.23_alpha'"
       ]
      },
-     "execution_count": 5,
+     "execution_count": 2,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
+    "import requests\n",
     "import sys\n",
     "sys.path.insert(0, '../../')\n",
     "import picea\n",
@@ -26,13 +35,28 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 4,
    "id": "22fc23c9-f231-4b72-81bf-2e2b813ead84",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "<Response [200]>"
+      ]
+     },
+     "execution_count": 4,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
-    "import requests\n",
-    "r = requests.get('https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/so.obo')"
+    "obo_url = (\n",
+    "    'https://raw.githubusercontent.com/The-Sequence-Ontology/'\n",
+    "    'SO-Ontologies/master/Ontology_Files/so.obo'\n",
+    ")\n",
+    "r = requests.get(obo_url)\n",
+    "r"
    ]
   },
   {
@@ -1994,6 +2018,9 @@
   }
  ],
  "metadata": {
+  "jupytext": {
+   "formats": "ipynb,py:percent"
+  },
   "kernelspec": {
    "display_name": "Python 3 (ipykernel)",
    "language": "python",
@@ -2009,8 +2036,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.9"
-  }
+   "version": "3.10.8"
+  },
+  "toc-autonumbering": false,
+  "toc-showcode": false,
+  "toc-showmarkdowntxt": false,
+  "toc-showtags": true
  },
  "nbformat": 4,
  "nbformat_minor": 5
diff --git a/docs/examples/ontology.pct.py b/docs/examples/ontology.pct.py
new file mode 100644
index 0000000..31fefc4
--- /dev/null
+++ b/docs/examples/ontology.pct.py
@@ -0,0 +1,107 @@
+# ---
+# jupyter:
+#   jupytext:
+#     formats: ipynb,py:percent
+#     text_representation:
+#       extension: .py
+#       format_name: percent
+#       format_version: '1.3'
+#       jupytext_version: 1.14.1
+#   kernelspec:
+#     display_name: Python 3 (ipykernel)
+#     language: python
+#     name: python3
+# ---
+
+# %% [markdown]
+# This notebook shows how to work with biological ontologies such as the sequence ontology or the gene ontology.
+
+# %%
+import sys
+
+import requests
+
+sys.path.insert(0, '../../')
+import picea
+
+picea.__version__
+
+# %%
+obo_url = (
+    'https://raw.githubusercontent.com/The-Sequence-Ontology/'
+    'SO-Ontologies/master/Ontology_Files/so.obo'
+)
+r = requests.get(obo_url)
+r
+
+# %% tags=[]
+r.text.split('\n')[:100]
+
+# %%
+so = picea.Ontology.from_obo(string=r.text)
+
+# %%
+ids = [el.ID for el in so['SO:0000866'].parents.elements]
+
+# %%
+'SO:0000866' in {el.ID for so_id in ids for el in so[so_id].children.elements}
+
+# %%
+len(so)
+
+# %%
+url = 'http://purl.obolibrary.org/obo/go.obo'
+# url = 'http://purl.obolibrary.org/obo/go/go-basic.obo'
+r = requests.get(url)
+go = picea.Ontology.from_obo(string=r.text)
+len(go.elements)
+
+# %%
+[(term.ID, term.name, len(term.parents)) for term in go['GO:0048316'].parents]
+
+# %%
+go['GO:0048316'].children
+
+# %%
+import networkx as nx
+
+nx.__version__
+
+# %%
+graph = nx.DiGraph()
+for term in [go['GO:0048316'], *go['GO:0048316'].children]:
+    graph.add_node(term.ID, name=term.name)
+    for child_ID in term._children:
+        graph.add_edge(term.ID, child_ID)
+layout = nx.planar_layout(graph)
+nx.draw(graph, pos=layout, node_shape='s')
+
+# %%
+import sys
+
+# !{sys.executable} -m pip install pygraphviz
+nx.nx_agraph.to_agraph(graph)
+
+# %%
+[(term.ID, term.name) for term in go['GO:0048316'].children]
+
+# %%
+go['GO:0010431'].__dict__
+
+# %%
+go['GO:0048316'].__dict__
+
+# %%
+go['GO:0048316'].children._elements.keys()
+
+# %% tags=[]
+[(term.ID,term.name) for term in go if term.__dict__.get('alt_id') and term._parents]
+
+# %%
+[(term.ID,term.name) for term in go if not term.parents and term.children]
+
+# %%
+go['GO:0005554'].__dict__
+
+# %%
+go['GO:0003674'].__dict__
diff --git a/mkdocs.yml b/mkdocs.yml
index 89bbe00..2290bca 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -37,7 +37,6 @@ theme:
 nav:
   - Overview:
       - Overview: index.md
-      - About: README.md
       - License: LICENSE.md
       - Contributing: CONTRIBUTING.md
   - Examples:
diff --git a/picea/dag.py b/picea/dag.py
index ef1a56a..1739c73 100644
--- a/picea/dag.py
+++ b/picea/dag.py
@@ -1,11 +1,14 @@
-from warnings import warn
-from abc import ABCMeta
-from typing import Optional, List, Iterable, Dict, DefaultDict, Callable
+"""Direct Acyclic Graphs"""
 from collections import defaultdict
 from copy import deepcopy
+from typing import Callable, DefaultDict, Dict, Hashable, Iterable, List, Optional
+from warnings import warn
 
 
-class DAGElement(metaclass=ABCMeta):
+class DAGElement:
+    """
+    Element in a DAG, intended to be used as BaseClass
+    """
     def __init__(
         self,
         ID: str,
@@ -97,14 +100,14 @@ def _traverse(
 
 
 class DirectedAcyclicGraph:
+    """"Base DAG class"""
     def __init__(self) -> None:
-        """[summary]"""
-        self._elements: Dict[str, DAGElement] = dict()
+        self._elements: Dict[Hashable, DAGElement] = dict()
 
-    def __getitem__(self, ID: str) -> DAGElement:
+    def __getitem__(self, ID: Hashable) -> DAGElement:
         return self._elements[ID]
 
-    def __setitem__(self, ID: str, element: DAGElement) -> None:
+    def __setitem__(self, ID: Hashable, element: DAGElement) -> None:
         if ID in self._elements:
             warn(f"Turning duplicate ID {ID} into unique ID")
             element._original_ID = ID
@@ -136,17 +139,48 @@ def elements(self) -> List[DAGElement]:
     def add(self, element: DAGElement) -> None:
         self[element.ID] = element
 
-    def pop(self, ID: str) -> DAGElement:
+    def pop(self, ID: Hashable) -> DAGElement:
         return self._elements.pop(ID)
 
-    def groupby(self, group_key) -> DefaultDict[str, "DirectedAcyclicGraph"]:
+    def groupby(
+        self,
+        group_func: Callable[[DAGElement], Hashable]
+    ) -> DefaultDict[Hashable, "DirectedAcyclicGraph"]:
+        """
+        Group elements in the current collection by calling 'group_func' and using \
+        the results as a dictionary key
+
+        Args:
+            group_func: Callable[[DagElement], Hashable] receives as input an element \
+                of the current collection and should return something that can be used \
+                as a dictionary key (i.e. it should be hashable)
+
+        Returns:
+            Dictionary with keys for groups and values individual DirectedAcyclicGraph \
+                subclasses
+        """
         grouped = defaultdict(self.__class__)
         for interval in self:
-            grouped[interval[group_key]][interval.ID] = interval
+            grouped[group_func(interval)][interval.ID] = interval
             interval._container = self
         return grouped
 
-    def filter(self, filter_func: Callable) -> "DirectedAcyclicGraph":
+    def filter(
+        self,
+        filter_func: Callable[[DAGElement], bool]
+    ) -> "DirectedAcyclicGraph":
+        """
+        Filter elements in the current collection based on the output of filter_func
+
+        Args:
+            filter_func: Callable[[DagElement], bool] receives as input an element \
+                of the current collection and returns a boolean indicating whether the \
+                element should be kept (i.e. an element with a 'True' return value will\
+                be kept)
+
+        Returns:
+            DirectedAcyclicGraph subclass with unwanted elements removed
+        """
         result = self.__class__()
         for interval in self:
             if filter_func(interval):
diff --git a/picea/ontology.py b/picea/ontology.py
index 8cabece..6dcfcaf 100644
--- a/picea/ontology.py
+++ b/picea/ontology.py
@@ -1,8 +1,9 @@
-from typing import List
-from itertools import groupby
-from collections import defaultdict
 import warnings
-from .dag import DirectedAcyclicGraph, DAGElement
+from collections import defaultdict
+from itertools import groupby
+from typing import List
+
+from .dag import DAGElement, DirectedAcyclicGraph
 
 
 class OntologyTerm(DAGElement):
diff --git a/picea/sequence.py b/picea/sequence.py
index f99976f..719c01f 100644
--- a/picea/sequence.py
+++ b/picea/sequence.py
@@ -1,20 +1,22 @@
-from warnings import warn
-from itertools import groupby, chain
-from subprocess import Popen, PIPE
-from collections import defaultdict, Counter
-from typing import Iterable, List, Tuple, Dict, Any, Optional, Callable, Union, TypeVar
-from abc import ABCMeta, abstractmethod
-import uuid
-import numpy as np
-import numpy.typing as npt
 import json
-from functools import reduce
 import re
-from dataclasses import dataclass, field
+import uuid
+from abc import ABCMeta, abstractmethod
+from collections import Counter, defaultdict
 from copy import deepcopy
+from dataclasses import dataclass, field
+from functools import reduce
+from itertools import chain, groupby
+from subprocess import PIPE, Popen
+from typing import Any, Callable, Dict, Iterable, List, Mapping, Optional, Tuple, TypeVar, Union
+from warnings import warn
+
+import numpy as np
+import numpy.typing as npt
+
 from .dag import DAGElement, DirectedAcyclicGraph
 
-T = TypeVar("T")  # Used for multiple dispatch
+SequenceType = TypeVar("SequenceType")  # Used for multiple dispatch
 
 
 # (character, code) tuples for encoding special characters in gff3
@@ -372,7 +374,7 @@ def parse_gtf_attribute_string(gtf_attribute_string: str) -> Dict[str, List[str]
             key, value = string_part.split(" ", maxsplit=1)
         except Exception as e:
             print(gtf_attribute_string, string_part)
-            raise Exception(e)
+            raise Exception('Error parsing gtf string') from e
         attributes[key].append(value.strip('"'))
     return attributes
 
@@ -394,7 +396,10 @@ def parse_gff_attribute_string(
             key, value = string_part.split("=", maxsplit=1)
         except Exception as e:
             print(gff_attribute_string, string_part)
-            raise Exception(e)
+            raise Exception(
+                f"{e}. Offending string part: {string_part}. "
+                f"Offending attribute string: {gff_attribute_string}"
+            ) from e
         # The gff spec lists the predefined attribute fields as starting with
         # a capital letter, but we process in lowercase so we don't miss
         # anything from poorly formatted files. When writing to gff we convert
@@ -645,11 +650,11 @@ def from_json(
                 for parent_ID in interval.parent:
                     try:
                         parent = sequence_annotation[parent_ID]
-                    except IndexError:
+                    except IndexError as err:
                         raise IndexError(
                             "Interval {interval.ID} is listing {parent_ID} "
                             "as Parent, but parent could not be found."
-                        )
+                        ) from err
                     parent._children.append(interval.ID)
         return sequence_annotation
 
@@ -890,20 +895,20 @@ def from_gff_line(
         try:
             start = int(start)
             end = int(end)
-        except ValueError:
+        except ValueError as err:
             error = "GFF start and end fields must be integer"
             if line_number:
                 error = f"{error}, gff line {line_number}"
-            raise ValueError(error)
+            raise ValueError(error) from err
 
         if score != ".":
             try:
                 score = float(score)
-            except ValueError:
+            except ValueError as err:
                 error = "GFF score field must be a float"
                 if line_number:
                     error = f"{error}, gff line {line_number}"
-                raise ValueError(error)
+                raise ValueError(error) from err
 
         if strand not in ("+", "-", "."):
             error = 'GFF strand must be one of "+", "-" or "."'
@@ -1356,7 +1361,7 @@ def __iter__(self) -> Iterable[Sequence]:
     def __len__(self) -> int:
         return len(self.headers)
 
-    def __add__(self: T, other: T) -> T:
+    def __add__(self: SequenceType, other: SequenceType) -> SequenceType:
         new_collection = self.__class__()
         return new_collection
 
@@ -1561,21 +1566,27 @@ def headers(self) -> List[str]:
     def n_seqs(self) -> int:
         return len(self._collection.keys())
 
-    def align(self, method: str = "mafft", method_kwargs: Dict[str, str] = dict()):
+    def align(
+        self,
+        method: Optional[str] = "mafft",
+        method_kwargs: Optional[Mapping[str, str]] = None
+    ) -> 'MultipleSequenceAlignment':
         """[summary]
 
         Args:
             method (str, optional): [description]. Defaults to 'mafft'.
-            method_kwargs (Dict[str, str], optional): [description]. \
+            method_kwargs (Mapping[str, str], optional): [description]. \
                 Defaults to dict().
 
         Returns:
             [type]: [description]
         """
+        if not method_kwargs:
+            method_kwargs = dict()
         fasta = self.to_fasta()
         command = [method, *chain(*method_kwargs.items()), "-"]
         process = Popen(command, stdin=PIPE, stdout=PIPE, stderr=PIPE)
-        stdout, stderr = process.communicate(input=fasta.encode())
+        stdout, _ = process.communicate(input=fasta.encode())
         aligned_fasta = stdout.decode().strip()
         return MultipleSequenceAlignment.from_fasta(string=aligned_fasta)
 
@@ -1585,14 +1596,15 @@ def pop(self, header: str) -> Sequence:
 
 
 class MultipleSequenceAlignment(SequenceCollection):
+    """
+    A container for multiple aligned DNA or amino acid sequences
+    """
     def __init__(
         self,
         sequences: Optional[Iterable[Sequence]] = None,
         sequence_annotation: Optional["SequenceAnnotation"] = None,
     ) -> None:
-        """
-        A container for multiple aligned DNA or amino acid sequences
-        """
+        super(MultipleSequenceAlignment).__init__()
         self._collection = np.empty((0, 0), dtype="uint8")
         self._header_idx = dict()
         if sequences:
diff --git a/picea/tree.py b/picea/tree.py
index c0d39f1..6e55bb9 100644
--- a/picea/tree.py
+++ b/picea/tree.py
@@ -1,24 +1,25 @@
+import json
 import re
+from collections import defaultdict
+from copy import deepcopy
+from dataclasses import InitVar, asdict, dataclass, field
+from enum import Enum
 from typing import (
-    Iterable,
     Callable,
+    DefaultDict,
+    Dict,
+    Generator,
+    Iterable,
     List,
     Optional,
-    Generator,
-    Dict,
-    Union,
     Tuple,
     Type,
-    DefaultDict,
+    Union,
 )
-from enum import Enum
-import json
-from dataclasses import dataclass, field, InitVar, asdict
-from collections import defaultdict
+
+import numpy as np
 from matplotlib import pyplot as plt
 from matplotlib.axes import SubplotBase
-import numpy as np
-from copy import deepcopy
 
 TreeDict = Dict[str, Union[str, int, float, List[Optional["TreeDict"]]]]
 
diff --git a/poetry.lock b/poetry.lock
index e9d5325..39358db 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,51 +1,116 @@
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
+
+[[package]]
+name = "aiofiles"
+version = "22.1.0"
+description = "File support for asyncio."
+optional = false
+python-versions = ">=3.7,<4.0"
+files = [
+    {file = "aiofiles-22.1.0-py3-none-any.whl", hash = "sha256:1142fa8e80dbae46bb6339573ad4c8c0841358f79c6eb50a493dceca14621bad"},
+    {file = "aiofiles-22.1.0.tar.gz", hash = "sha256:9107f1ca0b2a5553987a94a3c9959fe5b491fdf731389aa5b7b1bd0733e32de6"},
+]
+
+[[package]]
+name = "aiosqlite"
+version = "0.20.0"
+description = "asyncio bridge to the standard sqlite3 module"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "aiosqlite-0.20.0-py3-none-any.whl", hash = "sha256:36a1deaca0cac40ebe32aac9977a6e2bbc7f5189f23f4a54d5908986729e5bd6"},
+    {file = "aiosqlite-0.20.0.tar.gz", hash = "sha256:6d35c8c256637f4672f843c31021464090805bf925385ac39473fb16eaaca3d7"},
+]
+
+[package.dependencies]
+typing_extensions = ">=4.0"
+
+[package.extras]
+dev = ["attribution (==1.7.0)", "black (==24.2.0)", "coverage[toml] (==7.4.1)", "flake8 (==7.0.0)", "flake8-bugbear (==24.2.6)", "flit (==3.9.0)", "mypy (==1.8.0)", "ufmt (==2.3.0)", "usort (==1.0.8.post1)"]
+docs = ["sphinx (==7.2.6)", "sphinx-mdinclude (==0.5.3)"]
+
 [[package]]
 name = "anyio"
-version = "3.6.2"
+version = "4.3.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "dev"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.8"
+files = [
+    {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
+    {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
+]
 
 [package.dependencies]
+exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
 sniffio = ">=1.1"
+typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
-doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"]
-trio = ["trio (>=0.16,<0.22)"]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+trio = ["trio (>=0.23)"]
 
 [[package]]
 name = "appnope"
-version = "0.1.3"
+version = "0.1.4"
 description = "Disable App Nap on macOS >= 10.9"
-category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
+files = [
+    {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"},
+    {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
+]
 
 [[package]]
 name = "argon2-cffi"
-version = "21.3.0"
-description = "The secure Argon2 password hashing algorithm."
-category = "dev"
+version = "23.1.0"
+description = "Argon2 for Python"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+files = [
+    {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"},
+    {file = "argon2_cffi-23.1.0.tar.gz", hash = "sha256:879c3e79a2729ce768ebb7d36d4609e3a78a4ca2ec3a9f12286ca057e3d0db08"},
+]
 
 [package.dependencies]
 argon2-cffi-bindings = "*"
 
 [package.extras]
-dev = ["cogapp", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "pre-commit", "pytest", "sphinx", "sphinx-notfound-page", "tomli"]
-docs = ["furo", "sphinx", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
+dev = ["argon2-cffi[tests,typing]", "tox (>4)"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-copybutton", "sphinx-notfound-page"]
+tests = ["hypothesis", "pytest"]
+typing = ["mypy"]
 
 [[package]]
 name = "argon2-cffi-bindings"
 version = "21.2.0"
 description = "Low-level CFFI bindings for Argon2"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
+files = [
+    {file = "argon2-cffi-bindings-21.2.0.tar.gz", hash = "sha256:bb89ceffa6c791807d1305ceb77dbfacc5aa499891d2c55661c6459651fc39e3"},
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+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:20ef543a89dee4db46a1a6e206cd015360e5a75822f76df533845c3cbaf72670"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ed2937d286e2ad0cc79a7087d3c272832865f779430e0cc2b4f3718d3159b0cb"},
+    {file = "argon2_cffi_bindings-21.2.0-pp38-pypy38_pp73-win_amd64.whl", hash = "sha256:5e00316dabdaea0b2dd82d141cc66889ced0cdcbfa599e8b471cf22c620c329a"},
+]
 
 [package.dependencies]
 cffi = ">=1.0.1"
@@ -54,27 +119,53 @@ cffi = ">=1.0.1"
 dev = ["cogapp", "pre-commit", "pytest", "wheel"]
 tests = ["pytest"]
 
+[[package]]
+name = "arrow"
+version = "1.3.0"
+description = "Better dates & times for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
+]
+
+[package.dependencies]
+python-dateutil = ">=2.7.0"
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
+
 [[package]]
 name = "asttokens"
-version = "2.1.0"
+version = "2.4.1"
 description = "Annotate AST trees with source code positions"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"},
+    {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"},
+]
 
 [package.dependencies]
-six = "*"
+six = ">=1.12.0"
 
 [package.extras]
-test = ["astroid (<=2.5.3)", "pytest"]
+astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
+test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
 
 [[package]]
 name = "astunparse"
 version = "1.6.3"
 description = "An AST unparser for Python"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "astunparse-1.6.3-py2.py3-none-any.whl", hash = "sha256:c2652417f2c8b5bb325c885ae329bdf3f86424075c4fd1a128674bc6fba4b8e8"},
+    {file = "astunparse-1.6.3.tar.gz", hash = "sha256:5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872"},
+]
 
 [package.dependencies]
 six = ">=1.6.1,<2.0"
@@ -82,48 +173,92 @@ wheel = ">=0.23.0,<1.0"
 
 [[package]]
 name = "attrs"
-version = "22.1.0"
+version = "23.2.0"
 description = "Classes Without Boilerplate"
-category = "dev"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.7"
+files = [
+    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
+    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
+]
+
+[package.extras]
+cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
+dev = ["attrs[tests]", "pre-commit"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
+tests = ["attrs[tests-no-zope]", "zope-interface"]
+tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
+tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
+
+[[package]]
+name = "babel"
+version = "2.15.0"
+description = "Internationalization utilities"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
+    {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
+]
+
+[package.dependencies]
+pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
 
 [package.extras]
-dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
-docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
-tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
-tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
+dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
 [[package]]
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "backcall-0.2.0-py2.py3-none-any.whl", hash = "sha256:fbbce6a29f263178a1f7915c1940bde0ec2b2a967566fe1c65c1dfb7422bd255"},
+    {file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"},
+]
 
 [[package]]
 name = "beautifulsoup4"
-version = "4.11.1"
+version = "4.12.3"
 description = "Screen-scraping library"
-category = "dev"
 optional = false
 python-versions = ">=3.6.0"
+files = [
+    {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"},
+    {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
+]
 
 [package.dependencies]
 soupsieve = ">1.2"
 
 [package.extras]
+cchardet = ["cchardet"]
+chardet = ["chardet"]
+charset-normalizer = ["charset-normalizer"]
 html5lib = ["html5lib"]
 lxml = ["lxml"]
 
 [[package]]
 name = "black"
-version = "22.10.0"
+version = "22.12.0"
 description = "The uncompromising code formatter."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
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+    {file = "black-22.12.0-cp38-cp38-win_amd64.whl", hash = "sha256:82d9fe8fee3401e02e79767016b4907820a7dc28d70d137eb397b92ef3cc5bfc"},
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+    {file = "black-22.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:559c7a1ba9a006226f09e4916060982fd27334ae1998e7a38b3f33a37f7a2148"},
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+]
 
 [package.dependencies]
 click = ">=8.0.0"
@@ -141,57 +276,206 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "bleach"
-version = "5.0.1"
+version = "6.1.0"
 description = "An easy safelist-based HTML-sanitizing tool."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
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+]
 
 [package.dependencies]
 six = ">=1.9.0"
 webencodings = "*"
 
 [package.extras]
-css = ["tinycss2 (>=1.1.0,<1.2)"]
-dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"]
+css = ["tinycss2 (>=1.1.0,<1.3)"]
 
 [[package]]
 name = "certifi"
-version = "2022.9.24"
+version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
+files = [
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+]
 
 [[package]]
 name = "cffi"
-version = "1.15.1"
+version = "1.16.0"
 description = "Foreign Function Interface for Python calling C code."
-category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
+files = [
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 [package.dependencies]
 pycparser = "*"
 
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 optional = false
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-
-[package.extras]
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 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
+files = [
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 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
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 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
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-name = "contourpy"
-version = "1.0.6"
-description = "Python library for calculating contours of 2D quadrilateral grids"
-category = "main"
+name = "comm"
+version = "0.2.2"
+description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
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-python-versions = ">=3.7"
+python-versions = ">=3.8"
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 [package.dependencies]
-numpy = ">=1.16"
+traitlets = ">=4"
+
+[package.extras]
+test = ["pytest"]
+
+[[package]]
+name = "contourpy"
+version = "1.1.1"
+description = "Python library for calculating contours of 2D quadrilateral grids"
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 [package.dependencies]
 tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
@@ -240,12 +648,15 @@ toml = ["tomli"]
 name = "coveralls"
 version = "3.3.1"
 description = "Show coverage stats online via coveralls.io"
-category = "dev"
 optional = false
 python-versions = ">= 3.5"
+files = [
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 docopt = ">=0.6.1"
 requests = ">=1.0.0"
 
@@ -254,127 +665,221 @@ yaml = ["PyYAML (>=3.10)"]
 
 [[package]]
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-version = "0.11.0"
+version = "0.12.1"
 description = "Composable style cycles"
-category = "main"
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-python-versions = ">=3.6"
+python-versions = ">=3.8"
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+
+[package.extras]
+docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
+tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
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-version = "1.6.3"
+version = "1.8.1"
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 graphite = ["lz4 (>=1.7.4.2)"]
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 pathops = ["skia-pathops (>=0.5.0)"]
 plot = ["matplotlib"]
 repacker = ["uharfbuzz (>=0.23.0)"]
 symfont = ["sympy"]
 type1 = ["xattr"]
 ufo = ["fs (>=2.2.0,<3)"]
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+unicode = ["unicodedata2 (>=15.1.0)"]
 woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 
+[[package]]
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+description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
+optional = false
+python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
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+
 [[package]]
 name = "ghp-import"
 version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
-category = "main"
 optional = false
 python-versions = "*"
+files = [
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 [package.dependencies]
 python-dateutil = ">=2.8.1"
@@ -382,85 +887,123 @@ python-dateutil = ">=2.8.1"
 [package.extras]
 dev = ["flake8", "markdown", "twine", "wheel"]
 
+[[package]]
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+python-versions = ">=3.8"
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+
+[package.dependencies]
+astunparse = {version = ">=1.6", markers = "python_version < \"3.9\""}
+colorama = ">=0.4"
+
 [[package]]
 name = "idna"
-version = "3.4"
+version = "3.7"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
+files = [
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+]
 
 [[package]]
 name = "importlib-metadata"
-version = "5.0.0"
+version = "7.1.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "importlib_metadata-7.1.0-py3-none-any.whl", hash = "sha256:30962b96c0c223483ed6cc7280e7f0199feb01a0e40cfae4d4450fc6fab1f570"},
+    {file = "importlib_metadata-7.1.0.tar.gz", hash = "sha256:b78938b926ee8d5f020fc4772d487045805a55ddbad2ecf21c6d60938dc7fcd2"},
+]
 
 [package.dependencies]
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.10.0"
+version = "6.4.0"
 description = "Read resources from Python packages"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
+    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
+]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
-version = "1.1.1"
-description = "iniconfig: brain-dead simple config-ini parsing"
-category = "dev"
+version = "2.0.0"
+description = "brain-dead simple config-ini parsing"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
+files = [
+    {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
+    {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
+]
 
 [[package]]
 name = "ipykernel"
-version = "6.17.1"
+version = "6.29.4"
 description = "IPython Kernel for Jupyter"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
+files = [
+    {file = "ipykernel-6.29.4-py3-none-any.whl", hash = "sha256:1181e653d95c6808039c509ef8e67c4126b3b3af7781496c7cbfb5ed938a27da"},
+    {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"},
+]
 
 [package.dependencies]
 appnope = {version = "*", markers = "platform_system == \"Darwin\""}
-debugpy = ">=1.0"
+comm = ">=0.1.1"
+debugpy = ">=1.6.5"
 ipython = ">=7.23.1"
 jupyter-client = ">=6.1.12"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 matplotlib-inline = ">=0.1"
 nest-asyncio = "*"
 packaging = "*"
 psutil = "*"
-pyzmq = ">=17"
+pyzmq = ">=24"
 tornado = ">=6.1"
-traitlets = ">=5.1.0"
+traitlets = ">=5.4.0"
 
 [package.extras]
-docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt"]
-test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-cov", "pytest-timeout"]
+cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"]
+pyqt5 = ["pyqt5"]
+pyside6 = ["pyside6"]
+test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.23.5)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "ipython"
-version = "8.6.0"
+version = "8.12.3"
 description = "IPython: Productive Interactive Computing"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
+files = [
+    {file = "ipython-8.12.3-py3-none-any.whl", hash = "sha256:b0340d46a933d27c657b211a329d0be23793c36595acf9e6ef4164bc01a1804c"},
+    {file = "ipython-8.12.3.tar.gz", hash = "sha256:3910c4b54543c2ad73d06579aa771041b7d5707b033bd488669b4cf544e3b363"},
+]
 
 [package.dependencies]
 appnope = {version = "*", markers = "sys_platform == \"darwin\""}
@@ -471,13 +1014,14 @@ jedi = ">=0.16"
 matplotlib-inline = "*"
 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
 pickleshare = "*"
-prompt-toolkit = ">3.0.1,<3.1.0"
+prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0"
 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"
+typing-extensions = {version = "*", markers = "python_version < \"3.10\""}
 
 [package.extras]
-all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.20)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
+all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.21)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
 black = ["black"]
 doc = ["docrepr", "ipykernel", "matplotlib", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
 kernel = ["ipykernel"]
@@ -487,57 +1031,83 @@ notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
 test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
-test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
+test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
 
 [[package]]
 name = "ipython-genutils"
 version = "0.2.0"
 description = "Vestigial utilities from IPython"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "ipython_genutils-0.2.0-py2.py3-none-any.whl", hash = "sha256:72dd37233799e619666c9f639a9da83c34013a73e8bbc79a7a6348d93c61fab8"},
+    {file = "ipython_genutils-0.2.0.tar.gz", hash = "sha256:eb2e116e75ecef9d4d228fdc66af54269afa26ab4463042e33785b887c628ba8"},
+]
 
 [[package]]
 name = "ipywidgets"
-version = "8.0.2"
+version = "8.1.2"
 description = "Jupyter interactive widgets"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "ipywidgets-8.1.2-py3-none-any.whl", hash = "sha256:bbe43850d79fb5e906b14801d6c01402857996864d1e5b6fa62dd2ee35559f60"},
+    {file = "ipywidgets-8.1.2.tar.gz", hash = "sha256:d0b9b41e49bae926a866e613a39b0f0097745d2b9f1f3dd406641b4a57ec42c9"},
+]
 
 [package.dependencies]
-ipykernel = ">=4.5.1"
+comm = ">=0.1.3"
 ipython = ">=6.1.0"
-jupyterlab-widgets = ">=3.0,<4.0"
+jupyterlab-widgets = ">=3.0.10,<3.1.0"
 traitlets = ">=4.3.1"
-widgetsnbextension = ">=4.0,<5.0"
+widgetsnbextension = ">=4.0.10,<4.1.0"
 
 [package.extras]
-test = ["jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
+test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
+
+[[package]]
+name = "isoduration"
+version = "20.11.0"
+description = "Operations with ISO 8601 durations"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"},
+    {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"},
+]
+
+[package.dependencies]
+arrow = ">=0.15.0"
 
 [[package]]
 name = "jedi"
-version = "0.18.2"
+version = "0.19.1"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
+files = [
+    {file = "jedi-0.19.1-py2.py3-none-any.whl", hash = "sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0"},
+    {file = "jedi-0.19.1.tar.gz", hash = "sha256:cf0496f3651bc65d7174ac1b7d043eff454892c708a87d1b683e57b569927ffd"},
+]
 
 [package.dependencies]
-parso = ">=0.8.0,<0.9.0"
+parso = ">=0.8.3,<0.9.0"
 
 [package.extras]
 docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx (==1.8.5)", "sphinx-rtd-theme (==0.4.3)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"]
-qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
-testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
+qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
+testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
 
 [[package]]
 name = "jinja2"
-version = "3.1.2"
+version = "3.1.4"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"},
+    {file = "jinja2-3.1.4.tar.gz", hash = "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369"},
+]
 
 [package.dependencies]
 MarkupSafe = ">=2.0"
@@ -547,37 +1117,94 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "joblib"
-version = "1.2.0"
+version = "1.4.2"
 description = "Lightweight pipelining with Python functions"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "joblib-1.4.2-py3-none-any.whl", hash = "sha256:06d478d5674cbc267e7496a410ee875abd68e4340feff4490bcb7afb88060ae6"},
+    {file = "joblib-1.4.2.tar.gz", hash = "sha256:2382c5816b2636fbd20a09e0f4e9dad4736765fdfb7dca582943b9c1366b3f0e"},
+]
 
 [[package]]
-name = "jsonschema"
-version = "4.17.1"
-description = "An implementation of JSON Schema validation for Python"
-category = "dev"
+name = "json5"
+version = "0.9.25"
+description = "A Python implementation of the JSON5 data format."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "json5-0.9.25-py3-none-any.whl", hash = "sha256:34ed7d834b1341a86987ed52f3f76cd8ee184394906b6e22a1e0deb9ab294e8f"},
+    {file = "json5-0.9.25.tar.gz", hash = "sha256:548e41b9be043f9426776f05df8635a00fe06104ea51ed24b67f908856e151ae"},
+]
 
-[package.dependencies]
-attrs = ">=17.4.0"
-importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+[[package]]
+name = "jsonpointer"
+version = "2.4"
+description = "Identify specific nodes in a JSON document (RFC 6901)"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+files = [
+    {file = "jsonpointer-2.4-py2.py3-none-any.whl", hash = "sha256:15d51bba20eea3165644553647711d150376234112651b4f1811022aecad7d7a"},
+    {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
+]
+
+[[package]]
+name = "jsonschema"
+version = "4.22.0"
+description = "An implementation of JSON Schema validation for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema-4.22.0-py3-none-any.whl", hash = "sha256:ff4cfd6b1367a40e7bc6411caec72effadd3db0bbe5017de188f2d6108335802"},
+    {file = "jsonschema-4.22.0.tar.gz", hash = "sha256:5b22d434a45935119af990552c862e5d6d564e8f6601206b305a61fdf661a2b7"},
+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format-nongpl\""}
+jsonschema-specifications = ">=2023.03.6"
 pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
-pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
+referencing = ">=0.28.4"
+rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""}
+rpds-py = ">=0.7.1"
+uri-template = {version = "*", optional = true, markers = "extra == \"format-nongpl\""}
+webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format-nongpl\""}
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
 format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
+[[package]]
+name = "jsonschema-specifications"
+version = "2023.12.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"},
+    {file = "jsonschema_specifications-2023.12.1.tar.gz", hash = "sha256:48a76787b3e70f5ed53f1160d2b81f586e4ca6d1548c5de7085d1682674764cc"},
+]
+
+[package.dependencies]
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+referencing = ">=0.31.0"
+
 [[package]]
 name = "jupyter"
 version = "1.0.0"
 description = "Jupyter metapackage. Install all the Jupyter components in one go."
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "jupyter-1.0.0-py2.py3-none-any.whl", hash = "sha256:5b290f93b98ffbc21c0c7e749f054b3267782166d72fa5e3ed1ed4eaf34a2b78"},
+    {file = "jupyter-1.0.0.tar.gz", hash = "sha256:d9dc4b3318f310e34c82951ea5d6683f67bed7def4b259fafbfe4f1beb1d8e5f"},
+    {file = "jupyter-1.0.0.zip", hash = "sha256:3e1f86076bbb7c8c207829390305a2b1fe836d471ed54be66a3b8c41e7f46cc7"},
+]
 
 [package.dependencies]
 ipykernel = "*"
@@ -589,11 +1216,14 @@ qtconsole = "*"
 
 [[package]]
 name = "jupyter-client"
-version = "7.4.7"
+version = "7.4.9"
 description = "Jupyter protocol implementation and client libraries"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "jupyter_client-7.4.9-py3-none-any.whl", hash = "sha256:214668aaea208195f4c13d28eb272ba79f945fc0cf3f11c7092c20b2ca1980e7"},
+    {file = "jupyter_client-7.4.9.tar.gz", hash = "sha256:52be28e04171f07aed8f20e1616a5a552ab9fee9cbbe6c1896ae170c3880d392"},
+]
 
 [package.dependencies]
 entrypoints = "*"
@@ -610,253 +1240,817 @@ test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-com
 
 [[package]]
 name = "jupyter-console"
-version = "6.4.4"
+version = "6.6.3"
 description = "Jupyter terminal console"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "jupyter_console-6.6.3-py3-none-any.whl", hash = "sha256:309d33409fcc92ffdad25f0bcdf9a4a9daa61b6f341177570fdac03de5352485"},
+    {file = "jupyter_console-6.6.3.tar.gz", hash = "sha256:566a4bf31c87adbfadf22cdf846e3069b59a71ed5da71d6ba4d8aaad14a53539"},
+]
 
 [package.dependencies]
-ipykernel = "*"
+ipykernel = ">=6.14"
 ipython = "*"
 jupyter-client = ">=7.0.0"
-prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+prompt-toolkit = ">=3.0.30"
 pygments = "*"
+pyzmq = ">=17"
+traitlets = ">=5.4"
 
 [package.extras]
-test = ["pexpect"]
+test = ["flaky", "pexpect", "pytest"]
 
 [[package]]
 name = "jupyter-core"
-version = "5.0.0"
+version = "5.7.2"
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 python-versions = ">=3.6"
+files = [
+    {file = "mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307"},
+    {file = "mergedeep-1.3.4.tar.gz", hash = "sha256:0096d52e9dad9939c3d975a774666af186eda617e6ca84df4c94dec30004f2a8"},
+]
 
 [[package]]
 name = "mistune"
 version = "0.8.4"
 description = "The fastest markdown parser in pure Python"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "mistune-0.8.4-py2.py3-none-any.whl", hash = "sha256:88a1051873018da288eee8538d476dffe1262495144b33ecb586c4ab266bb8d4"},
+    {file = "mistune-0.8.4.tar.gz", hash = "sha256:59a3429db53c50b5c6bcc8a07f8848cb00d7dc8bdb431a4ab41920d201d4756e"},
+]
 
 [[package]]
 name = "mkapi"
 version = "1.0.14"
 description = "An Auto API Documentation tool."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "mkapi-1.0.14-py3-none-any.whl", hash = "sha256:88bff6a183f09a5c80acf3c9edfc32e0ff3e2585589a9b6a962aae0467a79a12"},
+    {file = "mkapi-1.0.14.tar.gz", hash = "sha256:b9b75ffeeeb6c29843ca703abf30464acac76c0867ca3ca66e3a825c0f258bb1"},
+]
 
 [package.dependencies]
 jinja2 = "*"
@@ -864,62 +2058,95 @@ markdown = "*"
 
 [[package]]
 name = "mkdocs"
-version = "1.4.2"
+version = "1.6.0"
 description = "Project documentation with Markdown."
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "mkdocs-1.6.0-py3-none-any.whl", hash = "sha256:1eb5cb7676b7d89323e62b56235010216319217d4af5ddc543a91beb8d125ea7"},
+    {file = "mkdocs-1.6.0.tar.gz", hash = "sha256:a73f735824ef83a4f3bcb7a231dcab23f5a838f88b7efc54a0eef5fbdbc3c512"},
+]
 
 [package.dependencies]
 click = ">=7.0"
 colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""}
 ghp-import = ">=1.0"
-importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 jinja2 = ">=2.11.1"
-markdown = ">=3.2.1,<3.4"
+markdown = ">=3.3.6"
+markupsafe = ">=2.0.1"
 mergedeep = ">=1.3.4"
+mkdocs-get-deps = ">=0.2.0"
 packaging = ">=20.5"
+pathspec = ">=0.11.1"
 pyyaml = ">=5.1"
 pyyaml-env-tag = ">=0.1"
 watchdog = ">=2.0"
 
 [package.extras]
 i18n = ["babel (>=2.9.0)"]
-min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"]
+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
 
 [[package]]
 name = "mkdocs-autorefs"
-version = "0.4.1"
+version = "1.0.1"
 description = "Automatically link across pages in MkDocs."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "mkdocs_autorefs-1.0.1-py3-none-any.whl", hash = "sha256:aacdfae1ab197780fb7a2dac92ad8a3d8f7ca8049a9cbe56a4218cd52e8da570"},
+    {file = "mkdocs_autorefs-1.0.1.tar.gz", hash = "sha256:f684edf847eced40b570b57846b15f0bf57fb93ac2c510450775dcf16accb971"},
+]
 
 [package.dependencies]
 Markdown = ">=3.3"
+markupsafe = ">=2.0.1"
 mkdocs = ">=1.1"
 
+[[package]]
+name = "mkdocs-get-deps"
+version = "0.2.0"
+description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "mkdocs_get_deps-0.2.0-py3-none-any.whl", hash = "sha256:2bf11d0b133e77a0dd036abeeb06dec8775e46efa526dc70667d8863eefc6134"},
+    {file = "mkdocs_get_deps-0.2.0.tar.gz", hash = "sha256:162b3d129c7fad9b19abfdcb9c1458a651628e4b1dea628ac68790fb3061c60c"},
+]
+
+[package.dependencies]
+importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+mergedeep = ">=1.3.4"
+platformdirs = ">=2.2.0"
+pyyaml = ">=5.1"
+
 [[package]]
 name = "mkdocs-jupyter"
-version = "0.20.1"
+version = "0.22.0"
 description = "Use Jupyter in mkdocs websites"
-category = "dev"
 optional = false
 python-versions = ">=3.7.1,<4"
+files = [
+    {file = "mkdocs-jupyter-0.22.0.tar.gz", hash = "sha256:585cc69bea4cb9faf6898131978dc9a9b225091ed4b6084f5ab65652a5e12185"},
+]
 
 [package.dependencies]
-jupytext = ">=1.11.02,<2.0.0"
+jupytext = ">=1.13.8,<2.0.0"
 mkdocs = ">=1.2.3,<2.0.0"
 mkdocs-material = ">=8.0.0,<9.0.0"
 nbconvert = ">=6.2.0,<7.0.0"
+Pygments = ">=2.12.0,<3.0.0"
 
 [[package]]
 name = "mkdocs-material"
-version = "8.5.10"
+version = "8.5.11"
 description = "Documentation that simply works"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "mkdocs_material-8.5.11-py3-none-any.whl", hash = "sha256:c907b4b052240a5778074a30a78f31a1f8ff82d7012356dc26898b97559f082e"},
+    {file = "mkdocs_material-8.5.11.tar.gz", hash = "sha256:b0ea0513fd8cab323e8a825d6692ea07fa83e917bb5db042e523afecc7064ab7"},
+]
 
 [package.dependencies]
 jinja2 = ">=3.0.2"
@@ -932,19 +2159,25 @@ requests = ">=2.26"
 
 [[package]]
 name = "mkdocs-material-extensions"
-version = "1.1.1"
+version = "1.3.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "mkdocs_material_extensions-1.3.1-py3-none-any.whl", hash = "sha256:adff8b62700b25cb77b53358dad940f3ef973dd6db797907c49e3c2ef3ab4e31"},
+    {file = "mkdocs_material_extensions-1.3.1.tar.gz", hash = "sha256:10c9511cea88f568257f960358a467d12b970e1f7b2c0e5fb2bb48cab1928443"},
+]
 
 [[package]]
 name = "mkdocstrings"
-version = "0.18.1"
+version = "0.19.1"
 description = "Automatic documentation from sources, for MkDocs."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "mkdocstrings-0.19.1-py3-none-any.whl", hash = "sha256:32a38d88f67f65b264184ea71290f9332db750d189dea4200cbbe408d304c261"},
+    {file = "mkdocstrings-0.19.1.tar.gz", hash = "sha256:d1037cacb4b522c1e8c164ed5d00d724a82e49dcee0af80db8fb67b384faeef9"},
+]
 
 [package.dependencies]
 Jinja2 = ">=2.11.1"
@@ -952,7 +2185,6 @@ Markdown = ">=3.3"
 MarkupSafe = ">=1.1"
 mkdocs = ">=1.2"
 mkdocs-autorefs = ">=0.3.1"
-mkdocstrings-python-legacy = ">=0.2"
 pymdown-extensions = ">=6.3"
 
 [package.extras]
@@ -961,32 +2193,41 @@ python = ["mkdocstrings-python (>=0.5.2)"]
 python-legacy = ["mkdocstrings-python-legacy (>=0.2.1)"]
 
 [[package]]
-name = "mkdocstrings-python-legacy"
-version = "0.2.2"
-description = "A legacy Python handler for mkdocstrings."
-category = "dev"
+name = "mkdocstrings-python"
+version = "0.8.3"
+description = "A Python handler for mkdocstrings."
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "mkdocstrings-python-0.8.3.tar.gz", hash = "sha256:9ae473f6dc599339b09eee17e4d2b05d6ac0ec29860f3fc9b7512d940fc61adf"},
+    {file = "mkdocstrings_python-0.8.3-py3-none-any.whl", hash = "sha256:4e6e1cd6f37a785de0946ced6eb846eb2f5d891ac1cc2c7b832943d3529087a7"},
+]
 
 [package.dependencies]
-mkdocstrings = ">=0.18"
-pytkdocs = ">=0.14"
+griffe = ">=0.24"
+mkdocstrings = ">=0.19"
 
 [[package]]
 name = "mypy-extensions"
-version = "0.4.3"
-description = "Experimental type system extensions for programs checked with the mypy typechecker."
-category = "dev"
+version = "1.0.0"
+description = "Type system extensions for programs checked with the mypy type checker."
 optional = false
-python-versions = "*"
+python-versions = ">=3.5"
+files = [
+    {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
+    {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
+]
 
 [[package]]
 name = "nbclassic"
-version = "0.4.8"
-description = "A web-based notebook environment for interactive computing"
-category = "dev"
+version = "1.0.0"
+description = "Jupyter Notebook as a Jupyter Server extension."
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "nbclassic-1.0.0-py3-none-any.whl", hash = "sha256:f99e4769b4750076cd4235c044b61232110733322384a94a63791d2e7beacc66"},
+    {file = "nbclassic-1.0.0.tar.gz", hash = "sha256:0ae11eb2319455d805596bf320336cda9554b41d99ab9a3c31bf8180bffa30e3"},
+]
 
 [package.dependencies]
 argon2-cffi = "*"
@@ -999,7 +2240,7 @@ jupyter-server = ">=1.8"
 nbconvert = ">=5"
 nbformat = "*"
 nest-asyncio = ">=1.5"
-notebook-shim = ">=0.1.0"
+notebook-shim = ">=0.2.3"
 prometheus-client = "*"
 pyzmq = ">=17"
 Send2Trash = ">=1.8.0"
@@ -1010,33 +2251,40 @@ traitlets = ">=4.2.1"
 [package.extras]
 docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
 json-logging = ["json-logging"]
-test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-playwright", "pytest-tornasync", "requests", "requests-unixsocket", "testpath"]
+test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-jupyter", "pytest-playwright", "pytest-tornasync", "requests", "requests-unixsocket", "testpath"]
 
 [[package]]
 name = "nbclient"
-version = "0.7.0"
+version = "0.10.0"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "dev"
 optional = false
-python-versions = ">=3.7.0"
+python-versions = ">=3.8.0"
+files = [
+    {file = "nbclient-0.10.0-py3-none-any.whl", hash = "sha256:f13e3529332a1f1f81d82a53210322476a168bb7090a0289c795fe9cc11c9d3f"},
+    {file = "nbclient-0.10.0.tar.gz", hash = "sha256:4b3f1b7dba531e498449c4db4f53da339c91d449dc11e9af3a43b4eb5c5abb09"},
+]
 
 [package.dependencies]
-jupyter-client = ">=6.1.5"
-nbformat = ">=5.0"
-nest-asyncio = "*"
-traitlets = ">=5.2.2"
+jupyter-client = ">=6.1.12"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+nbformat = ">=5.1"
+traitlets = ">=5.4"
 
 [package.extras]
-sphinx = ["Sphinx (>=1.7)", "autodoc-traits", "mock", "moto", "myst-parser", "sphinx-book-theme"]
-test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "nbconvert", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"]
+dev = ["pre-commit"]
+docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient[test]", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling"]
+test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
 
 [[package]]
 name = "nbconvert"
 version = "6.5.4"
 description = "Converting Jupyter Notebooks"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "nbconvert-6.5.4-py3-none-any.whl", hash = "sha256:d679a947f849a966cbbd0bf6e7fedcfdb64be3b20ce7cef11ad55c13f5820e19"},
+    {file = "nbconvert-6.5.4.tar.gz", hash = "sha256:9e3c7c6d491374cbdd5f35d268c05809357716d346f4573186bbeab32ee50bc1"},
+]
 
 [package.dependencies]
 beautifulsoup4 = "*"
@@ -1066,43 +2314,53 @@ webpdf = ["pyppeteer (>=1,<1.1)"]
 
 [[package]]
 name = "nbformat"
-version = "5.7.0"
+version = "5.10.4"
 description = "The Jupyter Notebook format"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "nbformat-5.10.4-py3-none-any.whl", hash = "sha256:3b48d6c8fbca4b299bf3982ea7db1af21580e4fec269ad087b9e81588891200b"},
+    {file = "nbformat-5.10.4.tar.gz", hash = "sha256:322168b14f937a5d11362988ecac2a4952d3d8e3a2cbeb2319584631226d5b3a"},
+]
 
 [package.dependencies]
-fastjsonschema = "*"
+fastjsonschema = ">=2.15"
 jsonschema = ">=2.6"
-jupyter-core = "*"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 traitlets = ">=5.1"
 
 [package.extras]
-test = ["check-manifest", "pep440", "pre-commit", "pytest", "testpath"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
+test = ["pep440", "pre-commit", "pytest", "testpath"]
 
 [[package]]
 name = "nest-asyncio"
-version = "1.5.6"
+version = "1.6.0"
 description = "Patch asyncio to allow nested event loops"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
+files = [
+    {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"},
+    {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"},
+]
 
 [[package]]
 name = "notebook"
-version = "6.5.2"
+version = "6.5.7"
 description = "A web-based notebook environment for interactive computing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "notebook-6.5.7-py3-none-any.whl", hash = "sha256:a6afa9a4ff4d149a0771ff8b8c881a7a73b3835f9add0606696d6e9d98ac1cd0"},
+    {file = "notebook-6.5.7.tar.gz", hash = "sha256:04eb9011dfac634fbd4442adaf0a8c27cd26beef831fe1d19faf930c327768e4"},
+]
 
 [package.dependencies]
 argon2-cffi = "*"
 ipykernel = "*"
 ipython-genutils = "*"
 jinja2 = "*"
-jupyter-client = ">=5.3.4"
+jupyter-client = ">=5.3.4,<8"
 jupyter-core = ">=4.6.1"
 nbclassic = ">=0.4.7"
 nbconvert = ">=5"
@@ -1122,72 +2380,127 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixs
 
 [[package]]
 name = "notebook-shim"
-version = "0.2.2"
+version = "0.2.4"
 description = "A shim layer for notebook traits and config"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "notebook_shim-0.2.4-py3-none-any.whl", hash = "sha256:411a5be4e9dc882a074ccbcae671eda64cceb068767e9a3419096986560e1cef"},
+    {file = "notebook_shim-0.2.4.tar.gz", hash = "sha256:b4b2cfa1b65d98307ca24361f5b30fe785b53c3fd07b7a47e89acb5e6ac638cb"},
+]
 
 [package.dependencies]
 jupyter-server = ">=1.8,<3"
 
 [package.extras]
-test = ["pytest", "pytest-console-scripts", "pytest-tornasync"]
+test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync"]
 
 [[package]]
 name = "numpy"
-version = "1.23.5"
-description = "NumPy is the fundamental package for array computing with Python."
-category = "main"
+version = "1.24.4"
+description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.8"
+files = [
+    {file = "numpy-1.24.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c0bfb52d2169d58c1cdb8cc1f16989101639b34c7d3ce60ed70b19c63eba0b64"},
+    {file = "numpy-1.24.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ed094d4f0c177b1b8e7aa9cba7d6ceed51c0e569a5318ac0ca9a090680a6a1b1"},
+    {file = "numpy-1.24.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:79fc682a374c4a8ed08b331bef9c5f582585d1048fa6d80bc6c35bc384eee9b4"},
+    {file = "numpy-1.24.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7ffe43c74893dbf38c2b0a1f5428760a1a9c98285553c89e12d70a96a7f3a4d6"},
+    {file = "numpy-1.24.4-cp310-cp310-win32.whl", hash = "sha256:4c21decb6ea94057331e111a5bed9a79d335658c27ce2adb580fb4d54f2ad9bc"},
+    {file = "numpy-1.24.4-cp310-cp310-win_amd64.whl", hash = "sha256:b4bea75e47d9586d31e892a7401f76e909712a0fd510f58f5337bea9572c571e"},
+    {file = "numpy-1.24.4-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:f136bab9c2cfd8da131132c2cf6cc27331dd6fae65f95f69dcd4ae3c3639c810"},
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+    {file = "numpy-1.24.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7215847ce88a85ce39baf9e89070cb860c98fdddacbaa6c0da3ffb31b3350bd5"},
+    {file = "numpy-1.24.4-cp311-cp311-win32.whl", hash = "sha256:4979217d7de511a8d57f4b4b5b2b965f707768440c17cb70fbf254c4b225238d"},
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+]
+
+[package.extras]
+docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-removed-in", "sphinxext-opengraph"]
+fpx = ["olefile"]
+mic = ["olefile"]
 tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
+typing = ["typing-extensions"]
+xmp = ["defusedxml"]
 
 [[package]]
 name = "pkgutil-resolve-name"
 version = "1.3.10"
 description = "Resolve a name to an object."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
+files = [
+    {file = "pkgutil_resolve_name-1.3.10-py3-none-any.whl", hash = "sha256:ca27cc078d25c5ad71a9de0a7a330146c4e014c2462d9af19c6b828280649c5e"},
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+]
 
 [[package]]
 name = "platformdirs"
-version = "2.5.4"
-description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "dev"
+version = "4.2.2"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "platformdirs-4.2.2-py3-none-any.whl", hash = "sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee"},
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+]
 
 [package.extras]
-docs = ["furo (>=2022.9.29)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.4)"]
-test = ["appdirs (==1.4.4)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
+docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
+type = ["mypy (>=1.8)"]
 
 [[package]]
 name = "pluggy"
-version = "1.0.0"
+version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
+files = [
+    {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
+    {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
+]
 
 [package.extras]
 dev = ["pre-commit", "tox"]
@@ -1246,33 +2646,56 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "prometheus-client"
-version = "0.15.0"
+version = "0.20.0"
 description = "Python client for the Prometheus monitoring system."
-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
+files = [
+    {file = "prometheus_client-0.20.0-py3-none-any.whl", hash = "sha256:cde524a85bce83ca359cc837f28b8c0db5cac7aa653a588fd7e84ba061c329e7"},
+    {file = "prometheus_client-0.20.0.tar.gz", hash = "sha256:287629d00b147a32dcb2be0b9df905da599b2d82f80377083ec8463309a4bb89"},
+]
 
 [package.extras]
 twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.33"
+version = "3.0.43"
 description = "Library for building powerful interactive command lines in Python"
-category = "dev"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.0"
+files = [
+    {file = "prompt_toolkit-3.0.43-py3-none-any.whl", hash = "sha256:a11a29cb3bf0a28a387fe5122cdb649816a957cd9261dcedf8c9f1fef33eacf6"},
+    {file = "prompt_toolkit-3.0.43.tar.gz", hash = "sha256:3527b7af26106cbc65a040bcc84839a3566ec1b051bb0bfe953631e704b0ff7d"},
+]
 
 [package.dependencies]
 wcwidth = "*"
 
 [[package]]
 name = "psutil"
-version = "5.9.4"
+version = "5.9.8"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+files = [
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+    {file = "psutil-5.9.8-cp27-cp27m-manylinux2010_x86_64.whl", hash = "sha256:611052c4bc70432ec770d5d54f64206aa7203a101ec273a0cd82418c86503bb7"},
+    {file = "psutil-5.9.8-cp27-cp27mu-manylinux2010_i686.whl", hash = "sha256:50187900d73c1381ba1454cf40308c2bf6f34268518b3f36a9b663ca87e65e36"},
+    {file = "psutil-5.9.8-cp27-cp27mu-manylinux2010_x86_64.whl", hash = "sha256:02615ed8c5ea222323408ceba16c60e99c3f91639b07da6373fb7e6539abc56d"},
+    {file = "psutil-5.9.8-cp27-none-win32.whl", hash = "sha256:36f435891adb138ed3c9e58c6af3e2e6ca9ac2f365efe1f9cfef2794e6c93b4e"},
+    {file = "psutil-5.9.8-cp27-none-win_amd64.whl", hash = "sha256:bd1184ceb3f87651a67b2708d4c3338e9b10c5df903f2e3776b62303b26cb631"},
+    {file = "psutil-5.9.8-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:aee678c8720623dc456fa20659af736241f575d79429a0e5e9cf88ae0605cc81"},
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+    {file = "psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d06016f7f8625a1825ba3732081d77c94589dca78b7a3fc072194851e88461a4"},
+    {file = "psutil-5.9.8-cp36-cp36m-win32.whl", hash = "sha256:7d79560ad97af658a0f6adfef8b834b53f64746d45b403f225b85c5c2c140eee"},
+    {file = "psutil-5.9.8-cp36-cp36m-win_amd64.whl", hash = "sha256:27cc40c3493bb10de1be4b3f07cae4c010ce715290a5be22b98493509c6299e2"},
+    {file = "psutil-5.9.8-cp37-abi3-win32.whl", hash = "sha256:bc56c2a1b0d15aa3eaa5a60c9f3f8e3e565303b465dbf57a1b730e7a2b9844e0"},
+    {file = "psutil-5.9.8-cp37-abi3-win_amd64.whl", hash = "sha256:8db4c1b57507eef143a15a6884ca10f7c73876cdf5d51e713151c1236a0e68cf"},
+    {file = "psutil-5.9.8-cp38-abi3-macosx_11_0_arm64.whl", hash = "sha256:d16bbddf0693323b8c6123dd804100241da461e41d6e332fb0ba6058f630f8c8"},
+    {file = "psutil-5.9.8.tar.gz", hash = "sha256:6be126e3225486dff286a8fb9a06246a5253f4c7c53b475ea5f5ac934e64194c"},
+]
 
 [package.extras]
 test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
@@ -1281,104 +2704,96 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 name = "ptyprocess"
 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"},
+    {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"},
+]
 
 [[package]]
 name = "pure-eval"
 version = "0.2.2"
 description = "Safely evaluate AST nodes without side effects"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "pure_eval-0.2.2-py3-none-any.whl", hash = "sha256:01eaab343580944bc56080ebe0a674b39ec44a945e6d09ba7db3cb8cec289350"},
+    {file = "pure_eval-0.2.2.tar.gz", hash = "sha256:2b45320af6dfaa1750f543d714b6d1c520a1688dec6fd24d339063ce0aaa9ac3"},
+]
 
 [package.extras]
 tests = ["pytest"]
 
-[[package]]
-name = "py"
-version = "1.11.0"
-description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-
-[[package]]
-name = "pycodestyle"
-version = "2.8.0"
-description = "Python style guide checker"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
-
 [[package]]
 name = "pycparser"
-version = "2.21"
+version = "2.22"
 description = "C parser in Python"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-
-[[package]]
-name = "pyflakes"
-version = "2.4.0"
-description = "passive checker of Python programs"
-category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.8"
+files = [
+    {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"},
+    {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"},
+]
 
 [[package]]
 name = "pygments"
-version = "2.13.0"
+version = "2.18.0"
 description = "Pygments is a syntax highlighting package written in Python."
-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
+files = [
+    {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
+    {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
+]
 
 [package.extras]
-plugins = ["importlib-metadata"]
+windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "pymdown-extensions"
-version = "9.8"
+version = "10.8.1"
 description = "Extension pack for Python Markdown."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
+    {file = "pymdown_extensions-10.8.1-py3-none-any.whl", hash = "sha256:f938326115884f48c6059c67377c46cf631c733ef3629b6eed1349989d1b30cb"},
+    {file = "pymdown_extensions-10.8.1.tar.gz", hash = "sha256:3ab1db5c9e21728dabf75192d71471f8e50f216627e9a1fa9535ecb0231b9940"},
+]
 
 [package.dependencies]
-markdown = ">=3.2"
+markdown = ">=3.6"
+pyyaml = "*"
+
+[package.extras]
+extra = ["pygments (>=2.12)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.0.9"
+version = "3.1.2"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
+files = [
+    {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"},
+    {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
+]
 
 [package.extras]
 diagrams = ["jinja2", "railroad-diagrams"]
 
-[[package]]
-name = "pyrsistent"
-version = "0.19.2"
-description = "Persistent/Functional/Immutable data structures"
-category = "dev"
-optional = false
-python-versions = ">=3.7"
-
 [[package]]
 name = "pytest"
-version = "7.2.0"
+version = "7.4.4"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
+files = [
+    {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"},
+    {file = "pytest-7.4.4.tar.gz", hash = "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280"},
+]
 
 [package.dependencies]
-attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
@@ -1387,96 +2802,275 @@ pluggy = ">=0.12,<2.0"
 tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
-testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
+testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "python-dateutil"
-version = "2.8.2"
+version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+files = [
+    {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
+    {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
+]
 
 [package.dependencies]
 six = ">=1.5"
 
 [[package]]
-name = "pytkdocs"
-version = "0.16.1"
-description = "Load Python objects documentation."
-category = "dev"
+name = "python-json-logger"
+version = "2.0.7"
+description = "A python library adding a json log formatter"
 optional = false
-python-versions = ">=3.7"
-
-[package.dependencies]
-astunparse = {version = ">=1.6", markers = "python_version < \"3.9\""}
+python-versions = ">=3.6"
+files = [
+    {file = "python-json-logger-2.0.7.tar.gz", hash = "sha256:23e7ec02d34237c5aa1e29a070193a4ea87583bb4e7f8fd06d3de8264c4b2e1c"},
+    {file = "python_json_logger-2.0.7-py3-none-any.whl", hash = "sha256:f380b826a991ebbe3de4d897aeec42760035ac760345e57b812938dc8b35e2bd"},
+]
 
-[package.extras]
-numpy-style = ["docstring_parser (>=0.7)"]
+[[package]]
+name = "pytz"
+version = "2024.1"
+description = "World timezone definitions, modern and historical"
+optional = false
+python-versions = "*"
+files = [
+    {file = "pytz-2024.1-py2.py3-none-any.whl", hash = "sha256:328171f4e3623139da4983451950b28e95ac706e13f3f2630a879749e7a8b319"},
+    {file = "pytz-2024.1.tar.gz", hash = "sha256:2a29735ea9c18baf14b448846bde5a48030ed267578472d8955cd0e7443a9812"},
+]
 
 [[package]]
 name = "pywin32"
-version = "305"
+version = "306"
 description = "Python for Window Extensions"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
+    {file = "pywin32-306-cp310-cp310-win32.whl", hash = "sha256:06d3420a5155ba65f0b72f2699b5bacf3109f36acbe8923765c22938a69dfc8d"},
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-description = "Send file to trash natively under Mac OS X, Windows and Linux."
-category = "dev"
+version = "1.8.3"
+description = "Send file to trash natively under Mac OS X, Windows and Linux"
 optional = false
-python-versions = "*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+files = [
+    {file = "Send2Trash-1.8.3-py3-none-any.whl", hash = "sha256:0c31227e0bd08961c7665474a3d1ef7193929fedda4233843689baa056be46c9"},
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+]
 
 [package.extras]
 nativelib = ["pyobjc-framework-Cocoa", "pywin32"]
 objc = ["pyobjc-framework-Cocoa"]
 win32 = ["pywin32"]
 
-[[package]]
-name = "setuptools"
-version = "65.6.0"
-description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
-optional = false
-python-versions = ">=3.7"
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-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
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-
-[[package]]
-name = "setuptools-scm"
-version = "7.0.5"
-description = "the blessed package to manage your versions by scm tags"
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-
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-packaging = ">=20.0"
-setuptools = "*"
-tomli = ">=1.0.0"
-typing-extensions = "*"
-
-[package.extras]
-test = ["pytest (>=6.2)", "virtualenv (>20)"]
-toml = ["setuptools (>=42)"]
-
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 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
+files = [
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+]
 
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-version = "1.3.0"
+version = "1.3.1"
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-category = "dev"
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+files = [
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-version = "2.3.2.post1"
+version = "2.5"
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-category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
+files = [
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+]
 
 [[package]]
 name = "stack-data"
-version = "0.6.1"
+version = "0.6.3"
 description = "Extract data from python stack frames and tracebacks for informative displays"
-category = "dev"
 optional = false
 python-versions = "*"
+files = [
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+]
 
 [package.dependencies]
 asttokens = ">=2.1.0"
@@ -1637,11 +3444,14 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 
 [[package]]
 name = "terminado"
-version = "0.17.0"
+version = "0.18.1"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
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+]
 
 [package.dependencies]
 ptyprocess = {version = "*", markers = "os_name != \"nt\""}
@@ -1649,1473 +3459,375 @@ pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
 tornado = ">=6.1.0"
 
 [package.extras]
-docs = ["pydata-sphinx-theme", "sphinx"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
 test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"]
+typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"]
 
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+version = "3.5.0"
 description = "threadpoolctl"
-category = "dev"
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-python-versions = ">=3.6"
+python-versions = ">=3.8"
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+]
 
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-category = "dev"
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-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
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+]
 
 [package.dependencies]
 webencodings = ">=0.4"
 
 [package.extras]
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-test = ["flake8", "isort", "pytest"]
-
-[[package]]
-name = "toml"
-version = "0.10.2"
-description = "Python Library for Tom's Obvious, Minimal Language"
-category = "dev"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+test = ["pytest", "ruff"]
 
 [[package]]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "main"
 optional = false
 python-versions = ">=3.7"
+files = [
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+]
 
 [[package]]
 name = "tornado"
-version = "6.2"
+version = "6.4"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "dev"
 optional = false
-python-versions = ">= 3.7"
+python-versions = ">= 3.8"
+files = [
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-description = ""
-category = "dev"
+version = "5.14.3"
+description = "Traitlets Python configuration system"
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-python-versions = ">=3.7"
+python-versions = ">=3.8"
+files = [
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 [package.extras]
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-test = ["pre-commit", "pytest"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
+
+[[package]]
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+version = "2.9.0.20240316"
+description = "Typing stubs for python-dateutil"
+optional = false
+python-versions = ">=3.8"
+files = [
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-category = "main"
+version = "4.11.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
+optional = false
+python-versions = ">=3.8"
+files = [
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+[[package]]
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+description = "RFC 6570 URI Template Processor"
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 python-versions = ">=3.7"
+files = [
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 [[package]]
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-category = "dev"
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-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
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+socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
+zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "watchdog"
-version = "2.1.9"
+version = "4.0.0"
 description = "Filesystem events monitoring"
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
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-]
-zipp = [
-    {file = "zipp-3.10.0-py3-none-any.whl", hash = "sha256:4fcb6f278987a6605757302a6e40e896257570d11c51628968ccb2a47e80c6c1"},
-    {file = "zipp-3.10.0.tar.gz", hash = "sha256:7a7262fd930bd3e36c50b9a64897aec3fafff3dfdeec9623ae22b40e93f99bb8"},
-]
+lock-version = "2.0"
+python-versions = ">=3.8, <3.12"
+content-hash = "1ed5df93f80eb32af7259350758a3a2ddf5ef9c1a4502c4ab5c3888ae93fa10d"
diff --git a/pyproject.toml b/pyproject.toml
index 953582f..a249e19 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,40 +6,43 @@ authors = ["Rens Holmer"]
 readme = "README.md"
 license = "MIT"
 classifiers = [
-            'Development Status :: 3 - Alpha',
-            'Natural Language :: English',
-            'Operating System :: MacOS',
-            'Operating System :: Microsoft :: Windows',
-            'Operating System :: POSIX',
-            'Operating System :: Unix',
-            'Intended Audience :: Developers',
-            'Intended Audience :: Science/Research',
-            'Topic :: Scientific/Engineering :: Bio-Informatics',
-            'Topic :: Utilities'
-        ]
+    'Development Status :: 3 - Alpha',
+    'Natural Language :: English',
+    'Operating System :: MacOS',
+    'Operating System :: Microsoft :: Windows',
+    'Operating System :: POSIX',
+    'Operating System :: Unix',
+    'Intended Audience :: Developers',
+    'Intended Audience :: Science/Research',
+    'Topic :: Scientific/Engineering :: Bio-Informatics',
+    'Topic :: Utilities',
+]
 repository = 'https://github.com/holmrenser/picea'
 
 [tool.poetry.dependencies]
-python = ">=3.8, <3.11"
+python = ">=3.8, <3.12"
 numpy = "^1.22.2"
 matplotlib = "^3.5.1"
-mkdocs = "^1.4.2"
+
 
 [tool.poetry.group.dev.dependencies]
-pytest = "^7.0"
-black = "^22.1.0"
-flake8 = "^4.0.1"
-coverage = {extras = ["toml"], version = "^6.3.1"}
+pytest = "^7.2.0"
+black = "^22.10.0"
+coverage = { extras = ["toml"], version = "^6.5.0" }
 coveralls = "^3.3.1"
-mkdocs = "^1.2.3"
+mkdocs = "^1.4.2"
 mkapi = "^1.0.14"
-mkdocs-material = "^8.1.11"
-mkdocs-jupyter = "^0.20.0"
-mkdocstrings = "^0.18.0"
+mkdocs-material = "^8.5.10"
+mkdocs-jupyter = "^0.22.0"
+mkdocstrings = "^0.19.0"
 jupyter = "^1.0.0"
-ipykernel = "^6.9.1"
-scipy = "^1.8.0"
+ipykernel = "^6.17.1"
+scipy = "^1.9.3"
 scikit-learn = "^1.0.2"
+mkdocstrings-python = "^0.8.2"
+jupytext = "^1.14.1"
+jupyterlab = "^3.5.0"
+ruff = "^0.4.5"
 
 [tool.poetry-version-plugin]
 source = "init"
@@ -47,7 +50,7 @@ source = "init"
 [tool.pytest.ini_options]
 minversion = "7.0"
 addopts = "--verbose --doctest-modules"
-testpaths = ["picea","tests"]
+testpaths = ["picea", "tests"]
 python_classes = "*Tests"
 python_functions = "test*"
 python_files = "*tests.py"
@@ -58,3 +61,25 @@ command_line = "-m pytest"
 
 [tool.coverage.report]
 omit = ["tests/*", "*__init__.py"]
+
+[tool.black]
+line-length = 120
+
+[tool.ruff]
+line-length = 120
+exclude = ['docs/*']
+lint.select = [
+    "E", # pycodestyle errors (settings from FastAPI, thanks, @tiangolo!)
+    "W", # pycodestyle warnings
+    "F", # pyflakes
+    "I", # isort
+    "C", # flake8-comprehensions
+    "B", # flake8-bugbear
+]
+lint.ignore = [
+    "E501", # line too long, handled by black
+    "C901", # too complex
+    "C408", # allow explicit `dict` and `list` calls
+    "B028", # don't want to always specify stacklevel for warnings
+
+]
diff --git a/tests/sequence_tests.py b/tests/sequence_tests.py
index e469c80..0b76f87 100644
--- a/tests/sequence_tests.py
+++ b/tests/sequence_tests.py
@@ -1,11 +1,11 @@
 from unittest import TestCase
 
 from picea import (
-    Sequence,
-    SequenceReader,
     BatchSequenceReader,
-    SequenceCollection,
     MultipleSequenceAlignment,
+    Sequence,
+    SequenceCollection,
+    SequenceReader,
     alphabets,
 )