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Releases: icgc-argo-workflows/nextflow-data-processing-utility-tools

Release 1.1.5

23 Apr 15:28
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  • adds set -euxo pipefail to process/cleanup-workdir.nf

Release 1.1.4

22 Apr 18:44
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  • bump song-client version default to 4.2.1
  • using new built-in jq for song-submit to extract analysisId instead of sed and added set -euxo pipefail to mitigate error swallowing

Release 1.1.3

16 Apr 19:39
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  • bump score-client default container version to `5.0.0

Release 1.1.2

14 Apr 15:00
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  • Updated SONG to version: 4.2.0

Release 1.1.1

03 Apr 19:59
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  • removed extract_analysis_id.nf in favour of integrated grep | sed | tr commands in song_submit.nf
  • song_manifest.nf uses out directory now, no impact on process emit
  • removed mkdir out from score_download.nf

Release 1.1.0

03 Apr 17:54
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  • Updated SONG to version: 4.1.1
  • Updated SCORE to version: 3.1.1
  • No longer using curl in song_get_analysis.nf, instead using sing search -a
  • Updated song_score_download.nf to use emitted files from scoreDownload process

Release 1.0.0

24 Mar 15:58
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Upgrade to NF20.x + Use secure env (#12)

* update readme

* use new take syntax

* updated env usage (untested)