Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Markduplicate issue that potentially affects CNV and SV calls #13

Open
junjun-zhang opened this issue Apr 27, 2021 · 0 comments
Open

Markduplicate issue that potentially affects CNV and SV calls #13

junjun-zhang opened this issue Apr 27, 2021 · 0 comments

Comments

@junjun-zhang
Copy link
Member

Keiran suggests to use samtools to markdup, manually perform markdup for tumour / normal pair then call sanger again to compare with original run. Affected donor DO35085, tumour aligned cram downloaded to 10.1.0.7 under /home/ubuntu/DO35085.

Manually perform new markdup then run Sanger again
@junjun-zhang junjun-zhang added this to the Bioinformatics Kanban milestone Apr 27, 2021
@lindaxiang lindaxiang removed this from the Bioinformatics Kanban milestone Sep 19, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@junjun-zhang @lindaxiang