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Kalman.bib
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@article{citeulike:5986027,
abstract = {{In the late 1980s in Thailand, there was a dramatic increase in the prevalence of infection with the human immunodeficiency virus type 1 (HIV-1) in sentinel surveillance cohorts.1?3 Initially, these groups consisted of injection-drug users and commercial sex workers; they were subsequently expanded to include persons in the general population. By 1995, the overall seroprevalence of HIV-1 reached a peak of 3.7\% among conscripts in the Royal Thai Army and of 12.5\% among conscripts from Northern Thailand.2,4,5 The Thai Ministry of Public Health responded with an effective HIV-prevention campaign, and the number of new HIV-1 infections per . . .}},
author = {Rerks-Ngarm, Supachai and Pitisuttithum, Punnee and Nitayaphan, Sorachai and Kaewkungwal, Jaranit and Chiu, Joseph and Paris, Robert and Premsri, Nakorn and Namwat, Chawetsan and de Souza, Mark and Adams, Elizabeth and Benenson, Michael and Gurunathan, Sanjay and Tartaglia, Jim and McNeil, John G. and Francis, Donald P. and Stablein, Donald and Birx, Deborah L. and Chunsuttiwat, Supamit and Khamboonruang, Chirasak and Thongcharoen, Prasert and Robb, Merlin L. and Michael, Nelson L. and Kunasol, Prayura and Kim, Jerome H.},
booktitle = {New England Journal of Medicine},
citeulike-article-id = {5986027},
citeulike-linkout-0 = {http://dx.doi.org/10.1056/nejmoa0908492},
citeulike-linkout-1 = {http://content.nejm.org/content/NEJMoa0908492v3/.abstract},
citeulike-linkout-2 = {http://content.nejm.org/content/NEJMoa0908492v3/.full.pdf},
citeulike-linkout-3 = {http://www.nejm.org/doi/abs/10.1056/NEJMoa0908492},
citeulike-linkout-4 = {http://view.ncbi.nlm.nih.gov/pubmed/19843557},
citeulike-linkout-5 = {http://www.hubmed.org/display.cgi?uids=19843557},
day = {3},
doi = {10.1056/nejmoa0908492},
issn = {1533-4406},
journal = {N Engl J Med},
keywords = {hiv-1, thai-trial},
month = dec,
number = {23},
pages = {2209--2220},
pmid = {19843557},
posted-at = {2011-09-22 23:48:21},
priority = {2},
publisher = {Massachusetts Medical Society},
title = {{Vaccination with ALVAC and AIDSVAX to Prevent HIV-1 Infection in Thailand}},
url = {http://dx.doi.org/10.1056/nejmoa0908492},
volume = {361},
year = {2009}
}
@book{MacKay:itp,
author = "David J. C. MacKay",
title = "Information Theory, Inference, and Learning Algorithms",
note = "Available from {\tt{http://www.inference.phy.cam.ac.uk/mackay/itila/}}",
publisher={Cambridge University Press},
url="http://www.cambridge.org/0521642981",
year = {2003}
}
@Book{williams,
author = {David Williams},
title = {Probability With Martingales},
publisher = {Cambridge University Press},
year = {1991}
}
@misc{Ng:cs229:Online,
author = {Ng, Andrew},
title = {CS229 Machine Learning},
year = {2012},
url = {http://cs229.stanford.edu}
}
@misc{Boyd:EE363:Online,
author = {Boyd, Stephen},
title = {EE363 Linear Dynamical Systems},
year = {2008},
url = {http://stanford.edu/class/ee363}
}
@inproceedings{kleeman1996understanding,
title={Understanding and applying Kalman filtering},
author={Kleeman, Lindsay},
booktitle={Proceedings of the Second Workshop on Perceptive Systems, Curtin University of Technology, Perth Western Australia (25-26 January 1996)},
year={1996}
}
@book{sarkka2013bayesian,
title={Bayesian filtering and smoothing},
author={S{\"a}rkk{\"a}, Simo},
volume={3},
year={2013},
publisher={Cambridge University Press}
}
@article{DBLP:journals_tsp_NemethFM14,
author = {Christopher Nemeth and
Paul Fearnhead and
Lyudmila Mihaylova},
title = {Sequential Monte Carlo Methods for State and Parameter Estimation
in Abruptly Changing Environments},
journal = {IEEE Transactions on Signal Processing},
volume = {62},
number = {5},
year = {2014},
pages = {1245-1255},
ee = {http://dx.doi.org/10.1109/TSP.2013.2296278},
bibsource = {DBLP, http://dblp.uni-trier.de}
}
@article{journals/tse/Vose91,
added-at = {2011-11-07T00:00:00.000+0100},
author = {Vose, Michael D.},
biburl = {http://www.bibsonomy.org/bibtex/234864fed2dfb5fa5ed609cd927d2d047/dblp},
ee = {http://doi.ieeecomputersociety.org/10.1109/32.92917},
interhash = {d2d9cfa8da5f1c0c9fa210bb6042c0cb},
intrahash = {34864fed2dfb5fa5ed609cd927d2d047},
journal = {IEEE Trans. Software Eng.},
keywords = {dblp},
number = 9,
pages = {972-975},
timestamp = {2011-11-07T00:00:00.000+0100},
title = {A Linear Algorithm For Generating Random Numbers With a Given Distribution.},
url = {http://dblp.uni-trier.de/db/journals/tse/tse17.html#Vose91},
volume = 17,
year = 1991
}
@article{Ciesielski61,
author = {Z. Ciesielski},
title = {Holder condition for realization of {G}aussian processes},
journal = tams,
volume={99},
year = 1961,
pages={403--413}
}
@book{liggett2010continuous,
title={Continuous Time Markov Processes: An Introduction},
author={Liggett, T.M.},
isbn={9780821884195},
series={Graduate studies in mathematics},
url={http://books.google.co.uk/books?id=ClW\_cKYSON0C},
year={2010},
publisher={American Mathematical Soc.}
}
@article{Bier2000,
abstract = {Of all the lifeforms that obtain their energy from glycolysis, yeast cells are among the most basic. Under certain conditions the concentrations of the glycolytic intermediates in yeast cells can oscillate. Individual yeast cells in a suspension can synchronize their oscillations to get in phase with each other. Although the glycolytic oscillations originate in the upper part of the glycolytic chain, the signaling agent in this synchronization appears to be acetaldehyde, a membrane-permeating metabolite at the bottom of the anaerobic part of the glycolytic chain. Here we address the issue of how a metabolite remote from the pacemaking origin of the oscillation may nevertheless control the synchronization. We present a quantitative model for glycolytic oscillations and their synchronization in terms of chemical kinetics. We show that, in essence, the common acetaldehyde concentration can be modeled as a small perturbation on the "pacemaker" whose effect on the period of the oscillations of cells in the same suspension is indeed such that a synchronization develops.},
author = {Bier, M and Bakker, B M and Westerhoff, H V},
doi = {10.1016/S0006-3495(00)76667-7},
isbn = {0006-3495},
issn = {00063495},
journal = {Biophysical journal},
number = {3},
pages = {1087--1093},
pmid = {10692299},
title = {{How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.}},
volume = {78},
year = {2000}
}