diff --git a/RNA-seq/renv.lock b/RNA-seq/renv.lock index 17288c89..dfa1101f 100644 --- a/RNA-seq/renv.lock +++ b/RNA-seq/renv.lock @@ -58,8 +58,9 @@ "Packages": { "AnnotationDbi": { "Package": "AnnotationDbi", - "Version": "1.64.1", + "Version": "1.66.0", "Source": "Bioconductor", + "Repository": "Bioconductor 3.19", "Requirements": [ "Biobase", "BiocGenerics", @@ -73,7 +74,7 @@ "stats", "stats4" ], - "Hash": "27587689922e22f60ec9ad0182a0a825" + "Hash": "b7df9c597fb5533fc8248d73b8c703ac" }, "BH": { "Package": "BH", @@ -86,28 +87,19 @@ "Package": "Biobase", "Version": "2.62.0", "Source": "Bioconductor", - "Requirements": [ - "BiocGenerics", - "R", - "methods", - "utils" - ], + "Requirements": ["BiocGenerics", "R", "methods", "utils"], "Hash": "38252a34e82d3ff6bb46b4e2252d2dce" }, "BiocBaseUtils": { "Package": "BiocBaseUtils", "Version": "1.4.0", "Source": "Bioconductor", - "Requirements": [ - "R", - "methods", - "utils" - ], + "Requirements": ["R", "methods", "utils"], "Hash": "8fdda3c850b2bea92ad4d0877c9549d1" }, "BiocFileCache": { "Package": "BiocFileCache", - "Version": "2.10.2", + "Version": "2.12.0", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -123,19 +115,13 @@ "stats", "utils" ], - "Hash": "d59a927de08cce606299009cc595b2cb" + "Hash": "9c3414bcfae204d56080dd0f0a220136" }, "BiocGenerics": { "Package": "BiocGenerics", "Version": "0.48.1", "Source": "Bioconductor", - "Requirements": [ - "R", - "graphics", - "methods", - "stats", - "utils" - ], + "Requirements": ["R", "graphics", "methods", "stats", "utils"], "Hash": "e34278c65d7dffcc08f737bf0944ca9a" }, "BiocManager": { @@ -143,9 +129,7 @@ "Version": "1.30.25", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "utils" - ], + "Requirements": ["utils"], "Hash": "3aec5928ca10897d7a0a1205aae64627" }, "BiocParallel": { @@ -170,14 +154,12 @@ "Package": "BiocVersion", "Version": "3.18.1", "Source": "Bioconductor", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "2ecaed86684f5fae76ed5530f9d29c4a" }, "Biostrings": { "Package": "Biostrings", - "Version": "2.70.3", + "Version": "2.72.1", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -189,12 +171,11 @@ "XVector", "crayon", "grDevices", - "graphics", "methods", "stats", "utils" ], - "Hash": "86ffa781f132f54e9c963a13fd6cf9fc" + "Hash": "886ff0ed958d6f839ed2e0d01f6853b3" }, "ComplexHeatmap": { "Package": "ComplexHeatmap", @@ -228,15 +209,12 @@ "Version": "1.2.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], + "Requirements": ["R", "methods"], "Hash": "065ae649b05f1ff66bb0c793107508f5" }, "DESeq2": { "Package": "DESeq2", - "Version": "1.42.1", + "Version": "1.44.0", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -256,7 +234,7 @@ "methods", "stats4" ], - "Hash": "39ce3d1e4fe223602fd27d2ae92c8535" + "Hash": "a90e0e67215ba95ccb29e93b169caaa4" }, "DT": { "Package": "DT", @@ -299,9 +277,7 @@ "Version": "4.1.6", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "methods" - ], + "Requirements": ["methods"], "Hash": "cd52c065c9e687c60c56b51f10f7bcd3" }, "EnvStats": { @@ -309,12 +285,7 @@ "Version": "3.0.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "MASS", - "R", - "ggplot2", - "nortest" - ], + "Requirements": ["MASS", "R", "ggplot2", "nortest"], "Hash": "08f0337e9a3b03a9027a423a1ae76ed3" }, "Formula": { @@ -322,15 +293,12 @@ "Version": "1.2-5", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats" - ], + "Requirements": ["R", "stats"], "Hash": "7a29697b75e027767a53fde6c903eca7" }, "GenomeInfoDb": { "Package": "GenomeInfoDb", - "Version": "1.38.8", + "Version": "1.40.1", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -338,28 +306,27 @@ "GenomeInfoDbData", "IRanges", "R", - "RCurl", "S4Vectors", + "UCSC.utils", "methods", "stats", "stats4", "utils" ], - "Hash": "155053909d2831bfac154a1118151d6b" + "Hash": "171e9becd9bb948b9e64eb3759208c94" }, "GenomeInfoDbData": { "Package": "GenomeInfoDbData", - "Version": "1.2.11", + "Version": "1.2.12", "Source": "Bioconductor", - "Requirements": [ - "R" - ], - "Hash": "10f32956181d1d46bd8402c93ac193e8" + "Requirements": ["R"], + "Hash": "c3c792a7b7f2677be56e8632c5b7543d" }, "GenomicRanges": { "Package": "GenomicRanges", - "Version": "1.54.1", + "Version": "1.56.2", "Source": "Bioconductor", + "Repository": "Bioconductor 3.19", "Requirements": [ "BiocGenerics", "GenomeInfoDb", @@ -372,20 +339,14 @@ "stats4", "utils" ], - "Hash": "7e0c1399af35369312d9c399454374e8" + "Hash": "fecd026026c4d45e3b57eee97bbbba92" }, "GetoptLong": { "Package": "GetoptLong", "Version": "1.0.5", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "GlobalOptions", - "R", - "crayon", - "methods", - "rjson" - ], + "Requirements": ["GlobalOptions", "R", "crayon", "methods", "rjson"], "Hash": "61fac01c73abf03ac72e88dc3952c1e3" }, "GlobalOptions": { @@ -393,11 +354,7 @@ "Version": "0.1.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods", - "utils" - ], + "Requirements": ["R", "methods", "utils"], "Hash": "c3f7b221e60c28f5f3533d74c6fef024" }, "IRanges": { @@ -419,13 +376,7 @@ "Package": "KEGGREST", "Version": "1.42.0", "Source": "Bioconductor", - "Requirements": [ - "Biostrings", - "R", - "httr", - "methods", - "png" - ], + "Requirements": ["Biostrings", "R", "httr", "methods", "png"], "Hash": "8d6e9f4dce69aec9c588c27ae79be08e" }, "MASS": { @@ -464,10 +415,7 @@ "Package": "MatrixGenerics", "Version": "1.14.0", "Source": "Bioconductor", - "Requirements": [ - "matrixStats", - "methods" - ], + "Requirements": ["matrixStats", "methods"], "Hash": "088cd2077b5619fcb7b373b1a45174e7" }, "MatrixModels": { @@ -475,12 +423,7 @@ "Version": "0.5-3", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "Matrix", - "R", - "methods", - "stats" - ], + "Requirements": ["Matrix", "R", "methods", "stats"], "Hash": "0776bf7526869e0286b0463cb72fb211" }, "MultiAssayExperiment": { @@ -524,10 +467,7 @@ "Version": "1.8.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "278c286fd6e9e75d0c2e8f731ea445c8" }, "R.oo": { @@ -535,12 +475,7 @@ "Version": "1.27.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "R.methodsS3", - "methods", - "utils" - ], + "Requirements": ["R", "R.methodsS3", "methods", "utils"], "Hash": "6ac79ff194202248cf946fe3a5d6d498" }, "R.utils": { @@ -548,14 +483,7 @@ "Version": "2.12.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "R.methodsS3", - "R.oo", - "methods", - "tools", - "utils" - ], + "Requirements": ["R", "R.methodsS3", "R.oo", "methods", "tools", "utils"], "Hash": "3dc2829b790254bfba21e60965787651" }, "R6": { @@ -563,9 +491,7 @@ "Version": "2.5.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "470851b6d5d0ac559e9d01bb352b4021" }, "RColorBrewer": { @@ -573,9 +499,7 @@ "Version": "1.1-3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "45f0398006e83a5b10b72a90663d8d8c" }, "RCurl": { @@ -583,11 +507,7 @@ "Version": "1.98-1.16", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "bitops", - "methods" - ], + "Requirements": ["R", "bitops", "methods"], "Hash": "ddbdf53d15b47be4407ede6914f56fbb" }, "RSQLite": { @@ -614,10 +534,7 @@ "Version": "1.0.14", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "methods", - "utils" - ], + "Requirements": ["methods", "utils"], "Hash": "e7bdd9ee90e96921ca8a0f1972d66682" }, "RcppArmadillo": { @@ -625,13 +542,7 @@ "Version": "14.2.2-1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "Rcpp", - "methods", - "stats", - "utils" - ], + "Requirements": ["R", "Rcpp", "methods", "stats", "utils"], "Hash": "9da7c242d94a8419d045f6b3a64b9765" }, "RcppEigen": { @@ -639,12 +550,7 @@ "Version": "0.3.4.0.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "Rcpp", - "stats", - "utils" - ], + "Requirements": ["R", "Rcpp", "stats", "utils"], "Hash": "4ac8e423216b8b70cb9653d1b3f71eb9" }, "Rdpack": { @@ -652,18 +558,12 @@ "Version": "2.6.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods", - "rbibutils", - "tools", - "utils" - ], + "Requirements": ["R", "methods", "rbibutils", "tools", "utils"], "Hash": "a9e2118c664c2cd694f03de074e8d4b3" }, "S4Arrays": { "Package": "S4Arrays", - "Version": "1.2.1", + "Version": "1.4.1", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -677,7 +577,7 @@ "methods", "stats" ], - "Hash": "3213a9826adb8f48e51af1e7b30fa568" + "Hash": "deeed4802c5132e88f24a432a1caf5e0" }, "S4Vectors": { "Package": "S4Vectors", @@ -696,7 +596,7 @@ }, "SparseArray": { "Package": "SparseArray", - "Version": "1.2.4", + "Version": "1.4.8", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -710,22 +610,17 @@ "XVector", "matrixStats", "methods", - "stats" + "stats", + "utils" ], - "Hash": "391092e7b81373ab624bd6471cebccd4" + "Hash": "97f70ff11c14edd379ee2429228cbb60" }, "SparseM": { "Package": "SparseM", "Version": "1.84-2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "graphics", - "methods", - "stats", - "utils" - ], + "Requirements": ["R", "graphics", "methods", "stats", "utils"], "Hash": "e78499cbcbbca98200254bd171379165" }, "SummarizedExperiment": { @@ -756,11 +651,7 @@ "Version": "3.99-0.18", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods", - "utils" - ], + "Requirements": ["R", "methods", "utils"], "Hash": "4a5eca1070ecfe97e68727ed4b9a89fa" }, "XVector": { @@ -784,11 +675,7 @@ "Version": "1.4-8", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods", - "utils" - ], + "Requirements": ["R", "methods", "utils"], "Hash": "2288423bb0f20a457800d7fc47f6aa54" }, "askpass": { @@ -796,9 +683,7 @@ "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "sys" - ], + "Requirements": ["sys"], "Hash": "c39f4155b3ceb1a9a2799d700fbd4b6a" }, "assertthat": { @@ -806,9 +691,7 @@ "Version": "0.2.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "tools" - ], + "Requirements": ["tools"], "Hash": "50c838a310445e954bc13f26f26a6ecf" }, "backports": { @@ -816,9 +699,7 @@ "Version": "1.5.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "e1e1b9d75c37401117b636b7ae50827a" }, "base64enc": { @@ -826,22 +707,19 @@ "Version": "0.1-3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "543776ae6848fde2f48ff3816d0628bc" }, "biomaRt": { "Package": "biomaRt", - "Version": "2.58.2", + "Version": "2.60.1", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ "AnnotationDbi", "BiocFileCache", - "XML", "digest", - "httr", + "httr2", "methods", "progress", "rappdirs", @@ -849,16 +727,14 @@ "utils", "xml2" ], - "Hash": "d6e043a6bfb4e2e256d00b8eee9c4266" + "Hash": "e53d495b9e6ecd5394acad1d53c3fa22" }, "bit": { "Package": "bit", "Version": "4.5.0.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "f89f074e0e49bf1dbe3eba0a15a91476" }, "bit64": { @@ -866,14 +742,7 @@ "Version": "4.6.0-1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "bit", - "graphics", - "methods", - "stats", - "utils" - ], + "Requirements": ["R", "bit", "graphics", "methods", "stats", "utils"], "Hash": "4f572fbc586294afff277db583b9060f" }, "bitops": { @@ -888,11 +757,7 @@ "Version": "1.2.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "methods", - "rlang", - "vctrs" - ], + "Requirements": ["methods", "rlang", "vctrs"], "Hash": "40415719b5a479b87949f3aa0aee737c" }, "boot": { @@ -900,11 +765,7 @@ "Version": "1.3-31", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "graphics", - "stats" - ], + "Requirements": ["R", "graphics", "stats"], "Hash": "de2a4646c18661d6a0a08ec67f40b7ed" }, "broom": { @@ -954,10 +815,7 @@ "Version": "1.1.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "fastmap", - "rlang" - ], + "Requirements": ["fastmap", "rlang"], "Hash": "cd9a672193789068eb5a2aad65a0dedf" }, "car": { @@ -990,9 +848,7 @@ "Version": "3.0-5", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "ac6cdb8552c61bd36b0e54d07cf2aab7" }, "checkmate": { @@ -1000,11 +856,7 @@ "Version": "2.3.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "backports", - "utils" - ], + "Requirements": ["R", "backports", "utils"], "Hash": "0e14e01ce07e7c88fd25de6d4260d26b" }, "circlize": { @@ -1031,10 +883,7 @@ "Version": "3.6.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "b21916dd77a27642b447374a5d30ecf3" }, "clue": { @@ -1042,13 +891,7 @@ "Version": "0.3-66", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "cluster", - "graphics", - "methods", - "stats" - ], + "Requirements": ["R", "cluster", "graphics", "methods", "stats"], "Hash": "3604501a29faffcd155ae84c1872eaf3" }, "cluster": { @@ -1056,13 +899,7 @@ "Version": "2.1.8", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats", - "utils" - ], + "Requirements": ["R", "grDevices", "graphics", "stats", "utils"], "Hash": "b361779da7f8b129a1859b6cf243ba58" }, "codetools": { @@ -1070,9 +907,7 @@ "Version": "0.2-20", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "61e097f35917d342622f21cdc79c256e" }, "colorspace": { @@ -1080,13 +915,7 @@ "Version": "2.1-1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "methods", - "stats" - ], + "Requirements": ["R", "grDevices", "graphics", "methods", "stats"], "Hash": "d954cb1c57e8d8b756165d7ba18aa55a" }, "commonmark": { @@ -1118,9 +947,7 @@ "Version": "0.5.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "9df43854f1c84685d095ed6270b52387" }, "crayon": { @@ -1128,11 +955,7 @@ "Version": "1.5.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "grDevices", - "methods", - "utils" - ], + "Requirements": ["grDevices", "methods", "utils"], "Hash": "859d96e65ef198fd43e82b9628d593ef" }, "crosstalk": { @@ -1140,12 +963,7 @@ "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R6", - "htmltools", - "jsonlite", - "lazyeval" - ], + "Requirements": ["R6", "htmltools", "jsonlite", "lazyeval"], "Hash": "ab12c7b080a57475248a30f4db6298c0" }, "curl": { @@ -1153,9 +971,7 @@ "Version": "6.1.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "8dd23d308c751efdf675124aad4bf5d7" }, "data.table": { @@ -1163,10 +979,7 @@ "Version": "1.16.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], + "Requirements": ["R", "methods"], "Hash": "38bbf05fc2503143db4c734a7e5cab66" }, "dbplyr": { @@ -1202,10 +1015,7 @@ "Version": "0.6.37", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "33698c4b3127fc9f506654607fb73676" }, "doBy": { @@ -1237,13 +1047,7 @@ "Version": "1.0.17", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "foreach", - "iterators", - "parallel", - "utils" - ], + "Requirements": ["R", "foreach", "iterators", "parallel", "utils"], "Hash": "451e5edf411987991ab6a5410c45011f" }, "dplyr": { @@ -1271,7 +1075,7 @@ }, "edgeR": { "Package": "edgeR", - "Version": "4.0.16", + "Version": "4.2.2", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", "Requirements": [ @@ -1284,7 +1088,7 @@ "stats", "utils" ], - "Hash": "a0405c7890708dcb53809d46758800f4" + "Hash": "4c31c0395110252e4ec7cf4ee9cbebb6" }, "emmeans": { "Package": "emmeans", @@ -1308,10 +1112,7 @@ "Version": "1.5.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats" - ], + "Requirements": ["R", "stats"], "Hash": "21ec52af13afbcab1cb317567b639b0a" }, "evaluate": { @@ -1319,9 +1120,7 @@ "Version": "1.0.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "e9651417729bbe7472e32b5027370e79" }, "fansi": { @@ -1329,11 +1128,7 @@ "Version": "1.0.6", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "utils" - ], + "Requirements": ["R", "grDevices", "utils"], "Hash": "962174cf2aeb5b9eea581522286a911f" }, "farver": { @@ -1355,9 +1150,7 @@ "Version": "1.0.3", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "192053c276525c8495ccfd523aa8f2d1" }, "flextable": { @@ -1389,9 +1182,7 @@ "Version": "0.1.1", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "f6068021eff4aba735a9b2353516636c" }, "fontLiberation": { @@ -1399,9 +1190,7 @@ "Version": "0.1.0", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "f918c5e723f86f409912104d5b7a71d6" }, "fontawesome": { @@ -1409,11 +1198,7 @@ "Version": "0.5.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "htmltools", - "rlang" - ], + "Requirements": ["R", "htmltools", "rlang"], "Hash": "bd1297f9b5b1fc1372d19e2c4cd82215" }, "fontquiver": { @@ -1421,11 +1206,7 @@ "Version": "0.2.1", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "fontBitstreamVera", - "fontLiberation" - ], + "Requirements": ["R", "fontBitstreamVera", "fontLiberation"], "Hash": "fc0f4226379e451057d55419fd31761e" }, "forcats": { @@ -1449,12 +1230,7 @@ "Version": "1.5.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "codetools", - "iterators", - "utils" - ], + "Requirements": ["R", "codetools", "iterators", "utils"], "Hash": "618609b42c9406731ead03adf5379850" }, "formatR": { @@ -1462,9 +1238,7 @@ "Version": "1.14", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "63cb26d12517c7863f5abb006c5e0f25" }, "formatters": { @@ -1488,10 +1262,7 @@ "Version": "1.6.5", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], + "Requirements": ["R", "methods"], "Hash": "7f48af39fa27711ea5fbd183b399920d" }, "futile.logger": { @@ -1499,12 +1270,7 @@ "Version": "1.4.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "futile.options", - "lambda.r", - "utils" - ], + "Requirements": ["R", "futile.options", "lambda.r", "utils"], "Hash": "99f0ace8c05ec7d3683d27083c4f1e7e" }, "futile.options": { @@ -1512,9 +1278,7 @@ "Version": "1.0.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "0d9bf02413ddc2bbe8da9ce369dcdd2b" }, "gdtools": { @@ -1537,10 +1301,7 @@ "Version": "0.1.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], + "Requirements": ["R", "methods"], "Hash": "15e9634c0fcd294799e9b2e929ed1b86" }, "ggfortify": { @@ -1626,10 +1387,7 @@ "Version": "1.8.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], + "Requirements": ["R", "methods"], "Hash": "5899f1eaa825580172bb56c08266f37c" }, "gridExtra": { @@ -1637,13 +1395,7 @@ "Version": "2.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "grDevices", - "graphics", - "grid", - "gtable", - "utils" - ], + "Requirements": ["grDevices", "graphics", "grid", "gtable", "utils"], "Hash": "7d7f283939f563670a697165b2cf5560" }, "gtable": { @@ -1714,10 +1466,7 @@ "Version": "0.11", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "xfun" - ], + "Requirements": ["R", "xfun"], "Hash": "d65ba49117ca223614f71b60d85b8ab7" }, "hms": { @@ -1725,13 +1474,7 @@ "Version": "1.1.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "lifecycle", - "methods", - "pkgconfig", - "rlang", - "vctrs" - ], + "Requirements": ["lifecycle", "methods", "pkgconfig", "rlang", "vctrs"], "Hash": "b59377caa7ed00fa41808342002138f9" }, "htmltools": { @@ -1764,20 +1507,13 @@ "yaml" ], "Hash": "04291cc45198225444a397606810ac37" - }, - "httpuv": { - "Package": "httpuv", - "Version": "1.6.15", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "R6", - "Rcpp", - "later", - "promises", - "utils" - ], + }, + "httpuv": { + "Package": "httpuv", + "Version": "1.6.15", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": ["R", "R6", "Rcpp", "later", "promises", "utils"], "Hash": "d55aa087c47a63ead0f6fc10f8fa1ee0" }, "httr": { @@ -1785,14 +1521,7 @@ "Version": "1.4.7", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "R6", - "curl", - "jsonlite", - "mime", - "openssl" - ], + "Requirements": ["R", "R6", "curl", "jsonlite", "mime", "openssl"], "Hash": "ac107251d9d9fd72f0ca8049988f1d7f" }, "isoband": { @@ -1800,10 +1529,7 @@ "Version": "0.2.7", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "grid", - "utils" - ], + "Requirements": ["grid", "utils"], "Hash": "0080607b4a1a7b28979aecef976d8bc2" }, "iterators": { @@ -1811,10 +1537,7 @@ "Version": "1.0.14", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "8954069286b4b2b0d023d1b288dce978" }, "jquerylib": { @@ -1822,9 +1545,7 @@ "Version": "0.1.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "htmltools" - ], + "Requirements": ["htmltools"], "Hash": "5aab57a3bd297eee1c1d862735972182" }, "jsonlite": { @@ -1832,9 +1553,7 @@ "Version": "1.8.9", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "methods" - ], + "Requirements": ["methods"], "Hash": "4e993b65c2c3ffbffce7bb3e2c6f832b" }, "knitr": { @@ -1858,10 +1577,7 @@ "Version": "0.4.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "graphics", - "stats" - ], + "Requirements": ["graphics", "stats"], "Hash": "b64ec208ac5bc1852b285f665d6368b3" }, "lambda.r": { @@ -1869,10 +1585,7 @@ "Version": "1.2.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "formatR" - ], + "Requirements": ["R", "formatR"], "Hash": "b1e925c4b9ffeb901bacf812cbe9a6ad" }, "later": { @@ -1880,10 +1593,7 @@ "Version": "1.4.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "Rcpp", - "rlang" - ], + "Requirements": ["Rcpp", "rlang"], "Hash": "501744395cac0bab0fbcfab9375ae92c" }, "lattice": { @@ -1891,14 +1601,7 @@ "Version": "0.22-6", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "grid", - "stats", - "utils" - ], + "Requirements": ["R", "grDevices", "graphics", "grid", "stats", "utils"], "Hash": "cc5ac1ba4c238c7ca9fa6a87ca11a7e2" }, "lazyeval": { @@ -1906,9 +1609,7 @@ "Version": "0.2.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "d908914ae53b04d4c0c0fd72ecc35370" }, "lifecycle": { @@ -1916,12 +1617,7 @@ "Version": "1.0.4", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "rlang" - ], + "Requirements": ["R", "cli", "glue", "rlang"], "Hash": "b8552d117e1b808b09a832f589b79035" }, "limma": { @@ -1971,10 +1667,7 @@ "Version": "1.5-9.10", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "lattice" - ], + "Requirements": ["R", "lattice"], "Hash": "7d8e0ac914051ca0254332387d9b5816" }, "logger": { @@ -1982,10 +1675,7 @@ "Version": "0.4.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "f25d781d5bc7757e08cf38c741a5ad1c" }, "lubridate": { @@ -1993,12 +1683,7 @@ "Version": "1.9.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "generics", - "methods", - "timechange" - ], + "Requirements": ["R", "generics", "methods", "timechange"], "Hash": "be38bc740fc51783a78edb5a157e4104" }, "magrittr": { @@ -2006,9 +1691,7 @@ "Version": "2.0.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "7ce2733a9826b3aeb1775d56fd305472" }, "matrixStats": { @@ -2016,9 +1699,7 @@ "Version": "1.5.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "9fd316b52ac8c24fef4c67fdd646e965" }, "memoise": { @@ -2026,10 +1707,7 @@ "Version": "2.0.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "cachem", - "rlang" - ], + "Requirements": ["cachem", "rlang"], "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" }, "mgcv": { @@ -2054,11 +1732,7 @@ "Version": "1.5.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "graphics", - "stats" - ], + "Requirements": ["R", "graphics", "stats"], "Hash": "f9d226d88d4087d817d4e616626ce8e5" }, "mime": { @@ -2066,9 +1740,7 @@ "Version": "0.12", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "tools" - ], + "Requirements": ["tools"], "Hash": "18e9c28c1d3ca1560ce30658b22ce104" }, "minqa": { @@ -2076,9 +1748,7 @@ "Version": "1.2.8", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "Rcpp" - ], + "Requirements": ["Rcpp"], "Hash": "785ef8e22389d4a7634c6c944f2dc07d" }, "modelr": { @@ -2104,10 +1774,7 @@ "Version": "0.5.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "colorspace", - "methods" - ], + "Requirements": ["colorspace", "methods"], "Hash": "4fd8900853b746af55b81fda99da7695" }, "mvtnorm": { @@ -2115,10 +1782,7 @@ "Version": "1.3-3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats" - ], + "Requirements": ["R", "stats"], "Hash": "c7241e6be9d6df551a2e539a50f5c875" }, "nestcolor": { @@ -2131,12 +1795,7 @@ "RemoteRepo": "nestcolor", "RemoteRef": "main", "RemoteSha": "f2a1559926431d8abd1ec32c6b30ae08b87b166b", - "Requirements": [ - "R", - "checkmate", - "ggplot2", - "lifecycle" - ], + "Requirements": ["R", "checkmate", "ggplot2", "lifecycle"], "Hash": "0498a54eaab9378e01a8bf34979375bd" }, "nlme": { @@ -2144,13 +1803,7 @@ "Version": "3.1-166", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "graphics", - "lattice", - "stats", - "utils" - ], + "Requirements": ["R", "graphics", "lattice", "stats", "utils"], "Hash": "ccbb8846be320b627e6aa2b4616a2ded" }, "nloptr": { @@ -2165,11 +1818,7 @@ "Version": "7.3-20", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats", - "utils" - ], + "Requirements": ["R", "stats", "utils"], "Hash": "c955edf99ff24a32e96bd0a22645af60" }, "nortest": { @@ -2177,9 +1826,7 @@ "Version": "1.0-4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "stats" - ], + "Requirements": ["stats"], "Hash": "e587e7a30c737ad415590976481332e4" }, "numDeriv": { @@ -2187,9 +1834,7 @@ "Version": "2016.8-1.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "df58958f293b166e4ab885ebcad90e02" }, "officer": { @@ -2217,9 +1862,7 @@ "Version": "2.3.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "askpass" - ], + "Requirements": ["askpass"], "Hash": "37a7f0abce0349f5950ce49f38c7626b" }, "pbkrtest": { @@ -2261,9 +1904,7 @@ "Version": "2.0.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "utils" - ], + "Requirements": ["utils"], "Hash": "01f28d4278f15c76cddbea05899c5d6f" }, "plogr": { @@ -2310,10 +1951,7 @@ "Version": "1.8.9", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "Rcpp" - ], + "Requirements": ["R", "Rcpp"], "Hash": "6b8177fd19982f0020743fadbfdbd933" }, "png": { @@ -2321,9 +1959,7 @@ "Version": "0.1-8", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "bd54ba8a0a5faded999a7aab6e46b374" }, "prettyunits": { @@ -2331,9 +1967,7 @@ "Version": "1.2.0", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "6b01fc98b1e86c4f705ce9dcfd2f57c7" }, "productplots": { @@ -2341,10 +1975,7 @@ "Version": "0.1.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "ggplot2", - "plyr" - ], + "Requirements": ["ggplot2", "plyr"], "Hash": "75630cc31052ba299a52bb1adbf59fae" }, "progress": { @@ -2352,13 +1983,7 @@ "Version": "1.2.3", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "R6", - "crayon", - "hms", - "prettyunits" - ], + "Requirements": ["R", "R6", "crayon", "hms", "prettyunits"], "Hash": "f4625e061cb2865f111b47ff163a5ca6" }, "promises": { @@ -2382,14 +2007,7 @@ "Version": "1.0.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "cli", - "lifecycle", - "magrittr", - "rlang", - "vctrs" - ], + "Requirements": ["R", "cli", "lifecycle", "magrittr", "rlang", "vctrs"], "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc" }, "quantreg": { @@ -2415,10 +2033,7 @@ "Version": "1.3.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "systemfonts", - "textshaping" - ], + "Requirements": ["systemfonts", "textshaping"], "Hash": "0595fe5e47357111f29ad19101c7d271" }, "random.cdisc.data": { @@ -2446,9 +2061,7 @@ "Version": "0.3.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "5e3c5dc0b071b21fa128676560dbe94d" }, "rbibutils": { @@ -2456,11 +2069,7 @@ "Version": "2.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "tools", - "utils" - ], + "Requirements": ["R", "tools", "utils"], "Hash": "dfc034a172fd88fc66b1a703894c4185" }, "reformulas": { @@ -2468,12 +2077,7 @@ "Version": "0.4.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "Matrix", - "Rdpack", - "methods", - "stats" - ], + "Requirements": ["Matrix", "Rdpack", "methods", "stats"], "Hash": "d23beb08dca526d22ff47ce399260ba4" }, "renv": { @@ -2481,9 +2085,7 @@ "Version": "1.0.11", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "utils" - ], + "Requirements": ["utils"], "Hash": "47623f66b4e80b3b0587bc5d7b309888" }, "rjson": { @@ -2491,9 +2093,7 @@ "Version": "0.2.23", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "7a04e9eff95857dbf557b4e5f0b3d1a8" }, "rlang": { @@ -2501,10 +2101,7 @@ "Version": "1.1.5", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "724dcc1490cd7071ee75ca2994a5446e" }, "rmarkdown": { @@ -2535,9 +2132,7 @@ "Version": "2.0.4", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "4c8415e0ec1e29f3f4f6fc108bef0144" }, "rtables": { @@ -2563,13 +2158,7 @@ "Version": "0.4.9", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R6", - "fs", - "htmltools", - "rappdirs", - "rlang" - ], + "Requirements": ["R6", "fs", "htmltools", "rappdirs", "rlang"], "Hash": "d53dbfddf695303ea4ad66f86e99b95d" }, "scales": { @@ -2597,12 +2186,7 @@ "Version": "1.4.6.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], + "Requirements": ["R", "grDevices", "graphics", "stats"], "Hash": "5c47e84dc0a3ca761ae1d307889e796d" }, "shiny": { @@ -2643,10 +2227,7 @@ "Version": "0.2.1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "shiny" - ], + "Requirements": ["R", "shiny"], "Hash": "5e9a50d226ea7bf8d93d583a93b39b36" }, "shinyTree": { @@ -2687,12 +2268,7 @@ "Version": "0.3.3", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "htmltools", - "htmlwidgets", - "jsonlite", - "shiny" - ], + "Requirements": ["htmltools", "htmlwidgets", "jsonlite", "shiny"], "Hash": "7dc8feb4207741ff581422a04fc8f3ea" }, "shinycssloaders": { @@ -2715,12 +2291,7 @@ "Version": "2.1.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "digest", - "jsonlite", - "shiny" - ], + "Requirements": ["R", "digest", "jsonlite", "shiny"], "Hash": "802e4786b353a4bb27116957558548d5" }, "shinyvalidate": { @@ -2728,12 +2299,7 @@ "Version": "0.1.3", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "glue", - "htmltools", - "rlang", - "shiny" - ], + "Requirements": ["glue", "htmltools", "rlang", "shiny"], "Hash": "fe6e75a1c1722b2d23cb4d4dbe1006df" }, "snow": { @@ -2741,10 +2307,7 @@ "Version": "0.4-4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "utils" - ], + "Requirements": ["R", "utils"], "Hash": "40b74690debd20c57d93d8c246b305d4" }, "sourcetools": { @@ -2752,9 +2315,7 @@ "Version": "0.1.7-1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "5f5a7629f956619d519205ec475fe647" }, "statmod": { @@ -2762,11 +2323,7 @@ "Version": "1.5.0", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "graphics", - "stats" - ], + "Requirements": ["R", "graphics", "stats"], "Hash": "26e158d12052c279bdd4ba858b80fb1f" }, "stringi": { @@ -2774,12 +2331,7 @@ "Version": "1.8.4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats", - "tools", - "utils" - ], + "Requirements": ["R", "stats", "tools", "utils"], "Hash": "39e1144fd75428983dc3f63aa53dfa91" }, "stringr": { @@ -3230,10 +2782,7 @@ "Version": "0.3.0", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "cpp11" - ], + "Requirements": ["R", "cpp11"], "Hash": "c5f3c201b931cd6474d17d8700ccb1c8" }, "tinytex": { @@ -3241,9 +2790,7 @@ "Version": "0.54", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "xfun" - ], + "Requirements": ["xfun"], "Hash": "3ec7e3ddcacc2d34a9046941222bf94d" }, "utf8": { @@ -3251,9 +2798,7 @@ "Version": "1.2.4", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "62b65c52671e6665f803ff02954446e9" }, "uuid": { @@ -3261,9 +2806,7 @@ "Version": "1.2-1", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "34e965e62a41fcafb1ca60e9b142085b" }, "vctrs": { @@ -3271,13 +2814,7 @@ "Version": "0.6.5", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], + "Requirements": ["R", "cli", "glue", "lifecycle", "rlang"], "Hash": "c03fa420630029418f7e6da3667aac4a" }, "viridisLite": { @@ -3285,9 +2822,7 @@ "Version": "0.4.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R" - ], + "Requirements": ["R"], "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" }, "withr": { @@ -3295,11 +2830,7 @@ "Version": "3.0.2", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "graphics" - ], + "Requirements": ["R", "grDevices", "graphics"], "Hash": "cc2d62c76458d425210d1eb1478b30b4" }, "xfun": { @@ -3307,12 +2838,7 @@ "Version": "0.50", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "grDevices", - "stats", - "tools" - ], + "Requirements": ["R", "grDevices", "stats", "tools"], "Hash": "44ab88837d3f8dfc66a837299b887fa6" }, "xml2": { @@ -3320,12 +2846,7 @@ "Version": "1.3.6", "Source": "Repository", "Repository": "RSPM", - "Requirements": [ - "R", - "cli", - "methods", - "rlang" - ], + "Requirements": ["R", "cli", "methods", "rlang"], "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" }, "xtable": { @@ -3333,11 +2854,7 @@ "Version": "1.8-4", "Source": "Repository", "Repository": "CRAN", - "Requirements": [ - "R", - "stats", - "utils" - ], + "Requirements": ["R", "stats", "utils"], "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2" }, "yaml": { @@ -3356,10 +2873,10 @@ }, "zlibbioc": { "Package": "zlibbioc", - "Version": "1.48.2", + "Version": "1.50.0", "Source": "Bioconductor", "Repository": "Bioconductor 3.19", - "Hash": "2344be62c2da4d9e9942b5d8db346e59" + "Hash": "3db02e3c460e1c852365df117a2b441b" } } }