From 46a209877c06e6319c7793fb1de722c4592e6175 Mon Sep 17 00:00:00 2001 From: niekdejonge Date: Mon, 24 Jun 2024 16:15:44 +0200 Subject: [PATCH] prospector --- ms2query/ms2library.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/ms2query/ms2library.py b/ms2query/ms2library.py index be17f438..802cc029 100644 --- a/ms2query/ms2library.py +++ b/ms2query/ms2library.py @@ -1,14 +1,16 @@ import os.path from typing import Dict, Iterator, List, Optional, Set, Tuple, Union + import numpy as np import pandas as pd from gensim.models import Word2Vec from matchms.Spectrum import Spectrum -from ms2deepscore import MS2DeepScore -from ms2deepscore.models import load_model as load_ms2ds_model, compute_embedding_array +from ms2deepscore.models import compute_embedding_array +from ms2deepscore.models import load_model as load_ms2ds_model from onnxruntime import InferenceSession from spec2vec.vector_operations import calc_vector, cosine_similarity_matrix from tqdm import tqdm + from ms2query.clean_and_filter_spectra import (clean_metadata, create_spectrum_documents, normalize_and_filter_peaks)