NAMESPACE

# Generated by roxygen2: do not edit by hand

export(accnet)
export(accnet_enrichment_analysis)
export(accnet_with_padj)
export(annotate)
export(as.data.frame.nr_list)
export(classifier)
export(clustering)
export(coincidents)
export(core_genome)
export(core_plots)
export(core_snp_genome)
export(core_snps_matrix)
export(dn_ds)
export(eggnogmapper)
export(export_accnet_aln)
export(export_core_to_fasta)
export(export_to_gephi)
export(extract_non_redundant)
export(heatmap_of_annotation)
export(install_db)
export(knnn)
export(load_gff_list)
export(mash)
export(mmseqs)
export(network_of_annotation)
export(non_redundant)
export(non_redundant_hier)
export(non_redundant_pangenomes)
export(outliers)
export(pangenomes_from_files)
export(pangenomes_from_mmseqs)
export(plasmidome)
export(plot_knnn_network)
export(remove_outliers)
export(screening)
export(sharedness)
export(similarity_network)
export(similarity_tree)
export(singles)
export(snps_map)
export(snps_pairwaise)
export(twins)
export(umap_plot)
import(ape)
import(data.table)
import(dbscan)
import(doParallel)
import(dplyr)
import(dtplyr)
import(foreach)
import(ggplot2)
import(htmltools)
import(igraph)
import(magrittr)
import(manipulateWidget)
import(mclust)
import(microseq)
import(openssl)
import(parallel)
import(parallelDist)
import(stringdist)
import(stringr)
import(threejs)
import(tibble)
import(tidyr)
import(uwot)
importFrom(data.table,fread)
importFrom(randomcoloR,distinctColorPalette)