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MOODS.search() deprecated? 1.9.4.1 locally installed via pip for python3.7 #35

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kandabarau opened this issue Sep 28, 2021 · 1 comment
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@kandabarau
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is MOODS.search() deprecated?

if yes - what function in latest 1.9.4.1 release can help me do that thing?

I am trying to use an old python script and while:

MOODS.search(seq, [bm], 48, algorithm="pla", absolute_threshold=True)

I receive an error
ModuleNotFoundError: No module named 'MOODS._cmodule'

@jhkorhonen
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Yes, it is deprecated.

See the example scripts and the wiki for how to use the current version of MOODS. The basic equivalent of old search is MOODS.scan.scan_dna, but do note that various input processing options, such as log-odds conversion, are no longer baked into the scanning function but rather should be done before invoking it.

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