diff --git a/CHANGELOG.md b/CHANGELOG.md index abbc718..5da5fab 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,22 +1,22 @@ # Changelog -## 0.6.0 +## 1.0.0 * New features - * `tree` command for generating hierarchical clustering trees from distance matrices. + * `tree` command for generating hierarchical clustering trees from distance matrices. * General - * Preferred extensions for genome database files and signatures files have been changed from + * Preferred extensions for genome database files and signatures files have been changed from `.db` and `.h5` to `.gdb` and `.gs`. * Performance improvements - * Use process-based parallelism by default for parsing multiple sequence files (much faster). - * Speed up `gambit dist` with `-s` option applied. + * Use process-based parallelism by default for parsing multiple sequence files (much faster). + * Speed up `gambit dist` with `-s` option applied. * CLI - * Strip directory and extension from input file IDs. This applies to CSV output for querying and - distance calculation and IDs in generated signature files. - * `-k` and `--prefix` parameters now default to values used RefSeq database. - * Add option to specify number of cores to use. - * Add option to disable progress bar printing. + * Strip directory and extension from input file IDs. This applies to CSV output for querying and + distance calculation and IDs in generated signature files. + * `-k` and `--prefix` parameters now default to values used RefSeq database. + * Add option to specify number of cores to use. + * Add option to disable progress bar printing. ## 0.5.1