v0.2.1

Changes from v0.2.0:

• Added license
• Add setuptools to runtime dependencies
• Minor docstring edits

v0.2.0

Changes from 0.1.0:

• User-facing
  • Rework JSON results format to be simpler and hide internal details
  • Add CSV results format (default)
  • Display progress while querying
  • Increase query performance and decrease memory usage
• Internal
  • Major redesign of GAMBITDatabase and query funcs
    • GAMBITDatabase stores indices of reference signatures instead of loading them all up front
    • Read reference signatures in chunks when calculating distance matrix
    • Maintain reference to SQLAlchemy Session object on GAMBITDatabase.
  • strict classification parameter
    • Enables new behavior of finding and reconciling all matching taxa
    • Defaults to off, which results old behavior of using only closest match
  • Fix bug in consensus_taxon() and add tests
  • Flexible, generic progress monitoring API
    • Add to long-running functions like querying, distance matrix calculation, and k-mer finding
  • "archive" export format for saving full result data.
  • Lots of test improvements
  • More type annotations
  • Update API docs

v0.1.0

Initial public release.