references.bib

@article{knuth84,
  author = {Knuth, Donald E.},
  title = {Literate Programming},
  year = {1984},
  issue_date = {May 1984},
  publisher = {Oxford University Press, Inc.},
  address = {USA},
  volume = {27},
  number = {2},
  issn = {0010-4620},
  url = {https://doi.org/10.1093/comjnl/27.2.97},
  doi = {10.1093/comjnl/27.2.97},
  journal = {Comput. J.},
  month = may,
  pages = {97–111},
  numpages = {15}
}


@Manual{rbase,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 0.22},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 1.33},
  url = {https://yihui.org/knitr/},
}

@Manual{rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2021},
  note = {R package version 2.9},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Book{xie2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.org/knitr/},
}

@misc{ArtworkAllisonHorst,
  title = {Artwork by @allison\_horst},
  author = {Horst, Allison},
  year = {2020},
  howpublished = {https://github.com/allisonhorst/stats-illustrations},
  url = {https://github.com/allisonhorst/stats-illustrations}
}

@manual{bryanGapminderDataGapminder2017,
  title = {Gapminder: {{Data}} from Gapminder},
  author = {Bryan, Jennifer},
  year = {2017},
  type = {Manual}
}

@book{buhrIntroductionDataScience,
  title = {Introduction to {{Data Science}} with {{R}} for {{Biochemists}}},
  author = {Buhr, Jannik},
  file = {/home/jannik/Zotero/storage/A5BYW3VM/index.html}
}

@book{changGraphicsCookbookPractical2013,
  title = {R {{Graphics Cookbook}}: {{Practical Recipes}} for {{Visualizing Data}}},
  shorttitle = {R {{Graphics Cookbook}}},
  author = {Chang, Winston},
  year = {2013},
  month = jan,
  edition = {1 edition},
  publisher = {{O'Reilly Media}},
  address = {{Beijing Cambridge Farnham K\"oln Sebastopol Tokyo}},
  isbn = {978-1-4493-1695-2},
  language = {English}
}

@book{fisherStatisticalMethodsExperimental1990,
  title = {Statistical {{Methods}}, {{Experimental Design}}, and {{Scientific Inference}}: {{A Re}}-Issue of {{Statistical Methods}} for {{Research Workers}}, {{The Design}} of {{Experiments}}, and {{Statistical Methods}} and {{Scientific Inference}}},
  shorttitle = {Statistical {{Methods}}, {{Experimental Design}}, and {{Scientific Inference}}},
  author = {Fisher, R. A. and Yates, F.},
  editor = {Bennett, J. H.},
  year = {1990},
  month = aug,
  edition = {1 edition},
  publisher = {{Oxford University Press}},
  address = {{Oxford England ; New York}},
  isbn = {978-0-19-852229-4},
  language = {English}
}

@book{grolemundHandsOnProgrammingWrite2014,
  title = {Hands-{{On Programming}} with {{R}}: {{Write Your Own Functions}} and {{Simulations}}},
  shorttitle = {Hands-{{On Programming}} with {{R}}},
  author = {Grolemund, Garrett and Wickham, Hadley},
  year = {2014},
  month = aug,
  publisher = {{O'Reilly Media}},
  address = {{Sebastopol, CA}},
  isbn = {978-1-4493-5901-0},
  language = {English}
}

@book{healyDataVisualizationPractical2018,
  title = {Data {{Visualization}}: {{A Practical Introduction}}},
  shorttitle = {Data {{Visualization}}},
  author = {Healy, Kieran},
  year = {2018},
  month = dec,
  edition = {1 edition},
  publisher = {{Princeton University Press}},
  address = {{Princeton, NJ}},
  isbn = {978-0-691-18162-2},
  language = {English}
}

@book{kimStatisticalInferenceData2019,
  title = {Statistical {{Inference}} via {{Data Science}}},
  author = {Kim, Chester Ismay {and} Albert Y.},
  year = {2019},
  publisher = {{CRC Press}},
  file = {/home/jannik/Zotero/storage/YQNT78Y5/index.html}
}

@incollection{knitr2014,
  title = {Knitr: {{A}} Comprehensive Tool for Reproducible Research in {{R}}},
  booktitle = {Implementing Reproducible Computational Research},
  author = {Xie, Yihui},
  editor = {Stodden, Victoria and Leisch, Friedrich and Peng, Roger D.},
  year = {2014},
  publisher = {{Chapman and Hall/CRC}}
}

@book{knitr2015,
  title = {Dynamic Documents with {{R}} and Knitr},
  author = {Xie, Yihui},
  year = {2015},
  edition = {Second},
  publisher = {{Chapman and Hall/CRC}},
  address = {{Boca Raton, Florida}}
}

@inproceedings{matejkaSameStatsDifferent2017,
  title = {Same {{Stats}}, {{Different Graphs}}: {{Generating Datasets}} with {{Varied Appearance}} and {{Identical Statistics Through Simulated Annealing}}},
  shorttitle = {Same {{Stats}}, {{Different Graphs}}},
  booktitle = {Proceedings of the 2017 {{CHI Conference}} on {{Human Factors}} in {{Computing Systems}}},
  author = {Matejka, Justin and Fitzmaurice, George},
  year = {2017},
  pages = {1290--1294},
  publisher = {{ACM}},
  address = {{New York, NY, USA}},
  doi = {10.1145/3025453.3025912},
  isbn = {978-1-4503-4655-9},
  keywords = {anscombe,scatter plots,visualization},
  series = {{{CHI}} '17}
}

@article{matthewsStorksDeliverBabies2000,
  title = {Storks {{Deliver Babies}} (P= 0.008)},
  author = {Matthews, Robert},
  year = {2000},
  volume = {22},
  pages = {36--38},
  issn = {1467-9639},
  doi = {10.1111/1467-9639.00013},
  copyright = {Teaching Statistics Trust, 2000},
  file = {/home/jannik/Zotero/storage/YVELIAYW/Matthews - 2000 - Storks Deliver Babies (p= 0.008).pdf;/home/jannik/Zotero/storage/Z2A5WX9G/1467-9639.html},
  journal = {Teaching Statistics},
  language = {en},
  number = {2}
}

@book{motulskyIntuitiveBiostatisticsNonmathematical2017,
  title = {Intuitive {{Biostatistics}}: {{A Nonmathematical Guide}} to {{Statistical Thinking}}},
  shorttitle = {Intuitive {{Biostatistics}}},
  author = {Motulsky, Harvey},
  year = {2017},
  month = nov,
  edition = {4 edition},
  publisher = {{Oxford University Press}},
  address = {{New York}},
  isbn = {978-0-19-064356-0},
  language = {English}
}

@misc{OrdinaryLeastSquares,
  title = {Ordinary {{Least Squares Regression}} Explained Visually},
  file = {/home/jannik/Zotero/storage/5XUPJ7ZB/ordinary-least-squares-regression.html},
  howpublished = {http://setosa.io/ev/ordinary-least-squares-regression/},
  journal = {Explained Visually}
}

@manual{R-knitr,
  title = {Knitr: {{A}} General-Purpose Package for Dynamic Report Generation in r},
  author = {Xie, Yihui},
  year = {2020},
  type = {Manual}
}

@manual{rpalmerpenguins,
  title = {Palmerpenguins: {{Palmer}} Archipelago (Antarctica) Penguin Data},
  author = {Horst, Allison and Hill, Alison and Gorman, Kristen},
  year = {2020},
  type = {Manual}
}

@manual{R-rmarkdown,
  title = {Rmarkdown: {{Dynamic}} Documents for r},
  author = {Allaire, JJ and Xie, Yihui and McPherson, Jonathan and Luraschi, Javier and Ushey, Kevin and Atkins, Aron and Wickham, Hadley and Cheng, Joe and Chang, Winston and Iannone, Richard},
  year = {2020},
  type = {Manual}
}

@manual{rcoreteamLanguageEnvironmentStatistical2020a,
  title = {R: {{A}} Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  year = {2020},
  address = {{Vienna, Austria}},
  organization = {{R Foundation for Statistical Computing}},
  type = {Manual}
}

@book{reinhartStatisticsDoneWrong2015,
  title = {Statistics {{Done Wrong}}: {{The Woefully Complete Guide}}},
  shorttitle = {Statistics {{Done Wrong}}},
  author = {Reinhart, Alex},
  year = {2015},
  month = mar,
  edition = {1 edition},
  publisher = {{No Starch Press}},
  address = {{San Francisco}},
  isbn = {978-1-59327-620-1},
  language = {English}
}

@book{rmarkdown2018,
  title = {R Markdown: {{The}} Definitive Guide},
  author = {Xie, Yihui and Allaire, J.J. and Grolemund, Garrett},
  year = {2018},
  publisher = {{Chapman and Hall/CRC}},
  address = {{Boca Raton, Florida}}
}

@book{wickhamAdvancedSecondEdition2019,
  title = {Advanced {{R}}, {{Second Edition}}},
  author = {Wickham, Hadley},
  year = {2019},
  month = jun,
  edition = {2 edition},
  publisher = {{Chapman and Hall/CRC}},
  address = {{Boca Raton}},
  isbn = {978-0-8153-8457-1},
  language = {English}
}

@book{wickhamDataScienceImport2017,
  title = {R for {{Data Science}}: {{Import}}, {{Tidy}}, {{Transform}}, {{Visualize}}, and {{Model Data}}},
  shorttitle = {R for {{Data Science}}},
  author = {Wickham, Hadley and Grolemund, Garrett},
  year = {2017},
  month = jan,
  edition = {1 edition},
  publisher = {{O'Reilly Media}},
  address = {{Sebastopol, CA}},
  isbn = {978-1-4919-1039-9},
  language = {English}
}

@article{wickhamLayeredGrammarGraphics2010,
  title = {A {{Layered Grammar}} of {{Graphics}}},
  author = {Wickham, Hadley},
  year = {2010},
  month = jan,
  volume = {19},
  pages = {3--28},
  issn = {1061-8600, 1537-2715},
  doi = {10.1198/jcgs.2009.07098},
  file = {/home/jannik/Zotero/storage/3TYM2Y55/Wickham - 2010 - A Layered Grammar of Graphics.pdf},
  journal = {Journal of Computational and Graphical Statistics},
  language = {en},
  number = {1}
}

@book{wickhamPackagesOrganizeTest2015,
  title = {R {{Packages}}: {{Organize}}, {{Test}}, {{Document}}, and {{Share Your Code}}},
  shorttitle = {R {{Packages}}},
  author = {Wickham, Hadley},
  year = {2015},
  month = apr,
  edition = {1 edition},
  publisher = {{O'Reilly Media}},
  address = {{Sebastopol, CA}},
  isbn = {978-1-4919-1059-7},
  language = {English}
}

@article{wickhamWelcomeTidyverse2019b,
  title = {Welcome to the {{tidyverse}}},
  author = {Wickham, Hadley and Averick, Mara and Bryan, Jennifer and Chang, Winston and McGowan, Lucy D'Agostino and Fran{\c c}ois, Romain and Grolemund, Garrett and Hayes, Alex and Henry, Lionel and Hester, Jim and Kuhn, Max and Pedersen, Thomas Lin and Miller, Evan and Bache, Stephan Milton and M{\"u}ller, Kirill and Ooms, Jeroen and Robinson, David and Seidel, Dana Paige and Spinu, Vitalie and Takahashi, Kohske and Vaughan, Davis and Wilke, Claus and Woo, Kara and Yutani, Hiroaki},
  year = {2019},
  volume = {4},
  pages = {1686},
  doi = {10.21105/joss.01686},
  journal = {Journal of Open Source Software},
  number = {43}
}

@book{wilkinsonGrammarGraphics2005,
  title = {The {{Grammar}} of {{Graphics}}},
  author = {Wilkinson, Leland and Wills, D. and Rope, D. and Norton, A. and Dubbs, R.},
  year = {2005},
  month = jul,
  edition = {2nd edition},
  publisher = {{Springer}},
  address = {{New York}},
  isbn = {978-0-387-24544-7},
  language = {English}
}

@manual{xieXaringanPresentationNinja2020,
  title = {Xaringan: {{Presentation}} Ninja},
  author = {Xie, Yihui},
  year = {2020},
  type = {Manual}
}


@Book{coddRelationalModelDatabase1990,
  title = {The Relational Model for Database Management: Version 2},
  shorttitle = {The Relational Model for Database Management},
  author = {E. F. Codd},
  year = {1990},
  publisher = {{Addison-Wesley Longman Publishing Co., Inc.}},
  address = {{USA}},
  file = {/home/jannik/Zotero/storage/UMCE2347/Codd - 1990 - The relational model for database management vers.pdf},
  isbn = {978-0-201-14192-4},
}

@Article{wickhamTidyData2014,
  title = {Tidy {{Data}}},
  author = {Hadley Wickham},
  year = {2014},
  month = {sep},
  volume = {59},
  pages = {1--23},
  issn = {1548-7660},
  doi = {10.18637/jss.v059.i10},
  copyright = {Copyright (c) 2013 Hadley  Wickham},
  file = {/home/jannik/Zotero/storage/FXZCYHTM/Wickham - 2014 - Tidy Data.pdf;/home/jannik/Zotero/storage/TAQQM2QH/v059i10.html},
  journal = {Journal of Statistical Software},
  language = {en},
  number = {1},
}
@Misc{ComplexityEvil,
  title = {The {{Complexity}} of {{Evil}}},
  file = {/home/jannik/Zotero/storage/9RPX4WRP/9781978814295.html},
  journal = {Rutgers University Press},
}
@Misc{williamsComplexityEvil,
  title = {The {{Complexity}} of {{Evil}}},
  author = {Timothy Williams},
  file = {/home/jannik/Zotero/storage/9RPX4WRP/9781978814295.html},
  journal = {Rutgers University Press},
}

@book{horst2019,
	title = {R & stats illustrations by @allison{\_}horst. Contribute to allisonhorst/stats-illustrations development by creating an account on GitHub},
	author = {{Horst}, {Allison}},
	year = {2019},
	month = {08},
	date = {2019-08-25},
	url = {https://github.com/allisonhorst/stats-illustrations},
	note = {original-date: 2018-12-15T23:16:36Z}
}
@Misc{WelcomeGgplot2,
  title = {Welcome | Ggplot2},
  file = {/home/jannik/Zotero/storage/NA5WWDXA/ggplot2-book.org.html},
  howpublished = {https://ggplot2-book.org/},
}

@Book{wickhamGgplot2ElegantGraphics2016,
  title = {Ggplot2: {{Elegant Graphics}} for {{Data Analysis}}},
  shorttitle = {Ggplot2},
  author = {Hadley Wickham},
  year = {2016},
  month = {jun},
  edition = {2nd ed. 2016 edition},
  publisher = {{Springer}},
  address = {{New York, NY}},
  isbn = {978-3-319-24275-0},
  language = {English},
}
@Article{SurvivorshipBias2020,
  title = {Survivorship Bias},
  year = {2020},
  month = {dec},
  annotation = {Page Version ID: 992910760},
  copyright = {Creative Commons Attribution-ShareAlike License},
  file = {/home/jannik/Zotero/storage/KHD238GN/index.html},
  journal = {Wikipedia},
  language = {en},
}
@TechReport{waldReprintMethodEstimating1980,
  title = {A {{Reprint}} of '{{A Method}} of {{Estimating Plane Vulnerability Based}} on {{Damage}} of {{Survivors}}.},
  author = {Abraham Wald},
  year = {1980},
  month = {jul},
  institution = {{CENTER FOR NAVAL ANALYSES ALEXANDRIA VA OPERATIONS EVALUATION GROUP}},
  file = {/home/jannik/Zotero/storage/XD65HHDR/Wald - 1980 - A Reprint of 'A Method of Estimating Plane Vulnera.pdf;/home/jannik/Zotero/storage/CSPVVWN9/ADA091073.html;/home/jannik/Zotero/storage/DZJ9HWRA/ADA091073.html},
  language = {en},
  number = {CRC-432},
}
@Article{ziemannGeneNameErrors2016,
  title = {Gene Name Errors Are Widespread in the Scientific Literature},
  author = {Mark Ziemann and Yotam Eren and Assam El-Osta},
  year = {2016},
  month = {aug},
  volume = {17},
  pages = {177},
  issn = {1474-760X},
  doi = {10.1186/s13059-016-1044-7},
  file = {/home/jannik/Zotero/storage/GD5FBJ45/Ziemann et al. - 2016 - Gene name errors are widespread in the scientific .pdf;/home/jannik/Zotero/storage/HX57ZIMK/s13059-016-1044-7.html},
  journal = {Genome Biology},
  keywords = {Gene symbol,Microsoft Excel,Supplementary data},
  number = {1},
}
@Article{matejka2017,
  title = {The {{Datasaurus Dozen}} - {{Same Stats}}, {{Different Graphs}} | {{Autodesk Research}}},
  author = {Justin Matejka and George Fitzmaurice},
  year = {2017},
  doi = {http://dx.doi.org/10.1145/3025453.3025912},
}

@software{quarto,
author = {Allaire, J.J. and Teague, Charles and Scheidegger, Carlos and Xie, Yihui and Dervieux, Christophe},
doi = {10.5281/zenodo.5960048},
month = jan,
title = {{Quarto}},
url = {https://github.com/quarto-dev/quarto-cli},
version = {1.2},
year = {2022}
}