.gitlab-ci.yml

variables:
  USERNS: "https://jangorecki.gitlab.io" # user namespace for local fork drat install string

stages:
  - test
  - deploy

test:
  stage: test
  image: docker.io/jangorecki/r-pkg
  script:
    # install suggests
    - Rscript -e 'install.packages(c("chron", "ggplot2", "plyr", "reshape", "reshape2", "testthat", "hexbin", "fastmatch", "nlme", "xts", "bit64", "gdata", "caret", "knitr", "curl", "zoo", "plm", "rmarkdown"))'
    - Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("GenomicRanges")'
    # add git commit hash metadata
    - echo "Commit:" $CI_BUILD_REF >> ./DESCRIPTION
    # build package
    - R CMD build .
    # run check
    - R CMD check $(ls -1t *.tar.gz | head -n 1) --no-manual --as-cran
    # produce artifacts
    - Rscript -e 'drat::insertArtifacts(repodir="public", repo.url="'"$USERNS"'/data.table", log.files=c("tests/tests.Rout"))'
  artifacts:
    paths:
      - public

test-vanilla:
  stage: test
  image: docker.io/jangorecki/r-base-dev
  script:
    # build package
    - R CMD build . --no-build-vignettes
    # run check
    - export _R_CHECK_CRAN_INCOMING_=FALSE
    - export _R_CHECK_FORCE_SUGGESTS_=FALSE
    - R CMD check $(ls -1t *.tar.gz | head -n 1) --ignore-vignettes --no-manual --as-cran
    # produce artifacts
    - Rscript -e 'install.packages("drat", repos="https://jangorecki.gitlab.io/drat")'
    - Rscript -e 'drat::insertArtifacts(repodir="public/vanilla", repo.url="'"$USERNS"'/data.table/vanilla", log.files=c("tests/tests.Rout"))'
  artifacts:
    paths:
      - public

test-r-devel:
  stage: test
  image: docker.io/jangorecki/drd-pkg
  script:
    # install suggests
    - RDscript -e 'install.packages(c("chron", "ggplot2", "plyr", "reshape", "reshape2", "testthat", "hexbin", "fastmatch", "nlme", "xts", "bit64", "gdata", "caret", "knitr", "curl", "zoo", "plm", "rmarkdown"))'
    - RDscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("GenomicRanges")'
    # build package
    - RD CMD build .
    # Some suggested deps might fail to install on R-devel
    - export _R_CHECK_FORCE_SUGGESTS_=FALSE
    # run check
    - RD CMD check $(ls -1t *.tar.gz | head -n 1) --no-manual --as-cran
    # produce artifacts
    - RDscript -e '.libPaths(setdiff(.libPaths(), "/usr/lib/R/library")); drat::insertArtifacts(repodir="public/r-devel", repo.url="'"$USERNS"'/data.table/r-devel", log.files=c("tests/tests.Rout"))'
  artifacts:
    paths:
      - public

test-r-3.0.0:
  stage: test
  image: docker.io/jangorecki/r-3.0.0
  script:
    # build package
    - R3 CMD build .
    # run check
    - export _R_CHECK_CRAN_INCOMING_=FALSE
    - export _R_CHECK_FORCE_SUGGESTS_=FALSE
    - R3 CMD check $(ls -1t *.tar.gz | head -n 1) --no-manual --as-cran
    # produce artifacts
    - R3script -e 'install.packages("drat", repos="https://jangorecki.gitlab.io/drat", method="curl")'
    - R3script -e 'drat::insertArtifacts(repodir="public/r-3.0.0", repo.url="'"$USERNS"'/data.table/r-3.0.0", log.files=c("tests/tests.Rout"))'
  artifacts:
    paths:
      - public

pages:
  only:
    - master
  stage: deploy
  image: docker.io/alpine
  script:
    - ls -lR public
  artifacts:
    paths:
      - public