DESCRIPTION

Package: mCSEA
Type: Package
Title: Methylated CpGs Set Enrichment Analysis
Version: 1.27.2
Author: Jordi Martorell-Marugán and Pedro Carmona-Sáez
Maintainer: Jordi Martorell-Marugán <jmartorellm@gmail.com>
Description: Identification of diferentially methylated regions (DMRs) in predefined regions
    (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data.
    Provides methods to rank CpG probes based on linear models and includes plotting functions.
Depends: R (>= 3.5), mCSEAdata, Homo.sapiens
Suggests: Biobase,
        BiocGenerics,
        BiocStyle,
        FlowSorted.Blood.450k,
        knitr,
        leukemiasEset,
        minfi,
        minfiData,
        rmarkdown,
        RUnit
Imports: biomaRt,
        fgsea,
        GenomicFeatures,
        GenomicRanges,
        ggplot2,
        graphics,
        grDevices,
        Gviz,
        IRanges,
        limma,
        methods,
        parallel,
        S4Vectors,
        stats,
        SummarizedExperiment,
        utils 
VignetteBuilder: knitr
biocViews: ImmunoOncology, DifferentialMethylation,
        DNAMethylation,
        Epigenetics,
        Genetics,
        GenomeAnnotation,
        MethylationArray,
        Microarray,
        MultipleComparison,
        TwoChannel
License: GPL-2
Encoding: UTF-8
LazyData: true