From 7d8678247d4bacf780c1b9aae815d851ad5839ad Mon Sep 17 00:00:00 2001 From: dmiller15 Date: Thu, 19 Dec 2024 11:10:05 -0500 Subject: [PATCH] :robot: update workflow paths --- .github/workflows/update_docker_tables.yml | 20 ++++++-------------- 1 file changed, 6 insertions(+), 14 deletions(-) diff --git a/.github/workflows/update_docker_tables.yml b/.github/workflows/update_docker_tables.yml index b821472..cecba6e 100644 --- a/.github/workflows/update_docker_tables.yml +++ b/.github/workflows/update_docker_tables.yml @@ -16,22 +16,14 @@ jobs: name: Checkout Repo with: ref: ${{ github.head_ref }} - - id: make-bwagatk-alignment-table - name: Make Docker Table for BWA/GATK Alignment Workflow + - id: make-single-sample-genotyping-table + name: Make Docker Table for GATK Genotyping Workflow run: | - python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_bwagatk_alignment.md workflows/kfdrc_alignment_wf.cwl - - id: make-gatk-cramtogvcf-table - name: Make Docker Table for GATK CRAM to gVCF Workflow + python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_gatk_genotyping.md workflows/kfdrc-single-sample-genotyping-wf.cwl + - id: make-germline-variant-table + name: Make Docker Table for Germline Variant Workflow run: | - python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_gatk_cramtogvcf.md workflows/kfdrc-gatk-haplotypecaller-wf.cwl - - id: make-sentieon-alignment-table - name: Make Docker Table for Sentieon Alignment Workflow - run: | - python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_sentieon_alignment.md workflows/kfdrc_sentieon_alignment_wf.cwl - - id: make-sentieon-gvcf-table - name: Make Docker Table for Sentieon gVCF Workflow - run: | - python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_sentieon_gvcf.md workflows/kfdrc_sentieon_gvcf_wf.cwl + python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_germline_variant.md workflows/kfdrc-germline-variant-wf.cwl - id: cpr name: Create Pull Request uses: peter-evans/create-pull-request@v5