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Excellent work. The article says “the spatial expression data and H&E images were aligned in a semi-manual process to honor their serial nature and allow efficient comparison as well as transfer of histopathological annotations from the H&E images.” Could you please share the alignment code? Or provide the aligned data? Thank you very much.
The text was updated successfully, but these errors were encountered:
Hi, the anndata objects available on scp and cellxgene already contain the aligned coordinates/HE images. If you use the provided coordinates of data and HEs of the same sample to plot in the same space you will see that they are aligned.
Beyond that the code used to aid the alignment can be found here:
Excellent work. The article says “the spatial expression data and H&E images were aligned in a semi-manual process to honor their serial nature and allow efficient comparison as well as transfer of histopathological annotations from the H&E images.” Could you please share the alignment code? Or provide the aligned data? Thank you very much.
The text was updated successfully, but these errors were encountered: