From 3666fb75008a37bdf69aef3c540e0ed93418b55b Mon Sep 17 00:00:00 2001 From: Maximilian Schall Date: Thu, 2 Nov 2023 16:56:30 +0100 Subject: [PATCH 01/15] Adds docker-action to build up-to-date docker images --- .github/workflows/docker.yml | 51 ++++++++++++++++++++++++++++++++++++ README.md | 28 ++++++++++++++++++++ 2 files changed, 79 insertions(+) create mode 100644 .github/workflows/docker.yml diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml new file mode 100644 index 0000000..7cab495 --- /dev/null +++ b/.github/workflows/docker.yml @@ -0,0 +1,51 @@ +--- +name: Build and push Docker image +on: + push: + branches: + - main + - add/docker_ci + paths: + - Dockerfile + - conda-lock.yml +jobs: + docker: + runs-on: ubuntu-latest + steps: + - name: Maximize build space + uses: easimon/maximize-build-space@master + with: + remove-dotnet: "true" + remove-codeql: "true" + remove-haskell: "true" + remove-android: "true" + overprovision-lvm: "true" + remove-docker-images: "true" + - name: Checkout + uses: actions/checkout@v3 + - name: Set up QEMU + uses: docker/setup-qemu-action@v2 + with: + platforms: amd64 + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v2 + - name: Login to Docker Hub + uses: docker/login-action@v2 + with: + registry: ${{secrets.DOCKER_REGISTRY}} + username: ${{secrets.DOCKER_REGISTRY_USERNAME}} + password: ${{secrets.DOCKER_REGISTRY_TOKEN}} + - name: Get torch version for amd + run: "echo TORCH_VERSION_AMD=$(cat conda-lock.yml | grep -E -A 4 'name: pytorch$' | + tail -n1 | grep -Eo [0-9]+.[0-9]+.[0-9]+) >> $GITHUB_ENV" + - name: Get cuda version for amd + run: "echo CUDA_VERSION_AMD=$(cat conda-lock.yml | grep -E -A 4 'name: + pytorch-cuda$' | tail -n1 | grep -Eo [0-9]+.[0-9]+) >> $GITHUB_ENV" + - name: Build and push AMD + uses: docker/build-push-action@v4 + with: + context: . + platforms: linux/amd64 + push: true + tags: ${{secrets.DOCKER_REPOSITORY}}:pytorch-${{env.TORCH_VERSION_AMD}}-cuda-${{env.CUDA_VERSION_AMD}}, ${{secrets.DOCKER_REPOSITORY}}:latest + \ No newline at end of file diff --git a/README.md b/README.md index 4f4048c..ad43268 100644 --- a/README.md +++ b/README.md @@ -232,3 +232,31 @@ Sometimes it's just quicker or unavoidable to create an environment via `conda-l ### Code style We use the `ruff` linter and `black` formatter. You should install their VS Code extensions and enable "Format on Save" inside VS Code. + + +## Continuous Integration and Deployment + +Our project uses GitHub Actions for CI/CD to automate the building and pushing of our Docker images to Docker Hub. This ensures that our Docker images are always up-to-date with the latest dependencies specified in `conda-lock.yml`. + +### Prerequisites for CI/CD + +To work with this CI/CD setup, you need to: + +- Set the following secrets in your GitHub repository: + - `DOCKER_REGISTRY`: The Docker registry URL (if using Docker Hub, this is not needed). + - `DOCKER_REGISTRY_USERNAME`: Your Docker Hub username. + - `DOCKER_REGISTRY_TOKEN`: Your Docker Hub access token or password. + - `DOCKER_REPOSITORY`: The repository name on Docker Hub where the image will be pushed. + +### How to Update Docker Images + +To update the Docker image: + +1. Make necessary changes to the `Dockerfile` or update dependencies in the `environment.yml`. +2. Generate a new `conda-lock.yml` by running `conda-lock -f environment.yml`. +3. Commit and push the changes to the `main` branch. +4. The GitHub Actions workflow will automatically build and push the new Docker image to Docker Hub. + +### Docker Tags + +The Docker images are tagged with the PyTorch and CUDA versions extracted from `conda-lock.yml`, as well as a `latest` tag for the most recent build. Use the specific tags if you need a particular version of PyTorch or CUDA, or use the `latest` tag for the most recent build. From 0a222c6c1f11c176f6e4329ad212206ec835e5a5 Mon Sep 17 00:00:00 2001 From: Maximilian Schall Date: Fri, 3 Nov 2023 15:12:16 +0100 Subject: [PATCH 02/15] Update README.md --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index ad43268..a00b21d 100644 --- a/README.md +++ b/README.md @@ -246,7 +246,6 @@ To work with this CI/CD setup, you need to: - `DOCKER_REGISTRY`: The Docker registry URL (if using Docker Hub, this is not needed). - `DOCKER_REGISTRY_USERNAME`: Your Docker Hub username. - `DOCKER_REGISTRY_TOKEN`: Your Docker Hub access token or password. - - `DOCKER_REPOSITORY`: The repository name on Docker Hub where the image will be pushed. ### How to Update Docker Images From cd70d69e57d66a1589602f70708be1efeaa32308 Mon Sep 17 00:00:00 2001 From: Maximilian Schall Date: Fri, 3 Nov 2023 15:13:04 +0100 Subject: [PATCH 03/15] Update .github/workflows/docker.yml Co-authored-by: Konstantin Dobler --- .github/workflows/docker.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 7cab495..016e1d1 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -47,5 +47,5 @@ jobs: context: . platforms: linux/amd64 push: true - tags: ${{secrets.DOCKER_REPOSITORY}}:pytorch-${{env.TORCH_VERSION_AMD}}-cuda-${{env.CUDA_VERSION_AMD}}, ${{secrets.DOCKER_REPOSITORY}}:latest + tags: konstantinjdobler/nlp-research-template:pytorch${{env.TORCH_VERSION_AMD}}-cuda${{env.CUDA_VERSION_AMD}}, konstantinjdobler/nlp-research-template:latest \ No newline at end of file From b2e070c6dbb5fb065634d0798ac91605bdc836b4 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:07:43 +0100 Subject: [PATCH 04/15] Update .github/workflows/docker.yml --- .github/workflows/docker.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 016e1d1..de3048c 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -1,4 +1,3 @@ ---- name: Build and push Docker image on: push: From cf2e673921091f89f136a00c365eb0d8ef314328 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:15:22 +0100 Subject: [PATCH 05/15] add latest lock files --- conda-lock.yml | 4340 ++++++++++++++++++++++++++++++++++----- environment.yml | 2 +- ppc64le.conda-lock.yml | 590 +++--- ppc64le.environment.yml | 1 - 4 files changed, 4067 insertions(+), 866 deletions(-) diff --git a/conda-lock.yml b/conda-lock.yml index a70f2ff..fb0d271 100644 --- a/conda-lock.yml +++ b/conda-lock.yml @@ -15,6 +15,7 @@ metadata: content_hash: linux-64: 502516cb5f4e1d573fde51d7b0285c6d71a6954939a8031833a43e11174d4768 win-64: 181bd7bdad5d202f2956d443b7bcd73d3eacdf83e99769d3c0db0159bd3ff775 + osx-arm64: 13284181e452e0398e88d7bc749a93e108c97866348781c60404d81914f443d0 channels: - url: conda-forge used_env_vars: [] @@ -22,6 +23,7 @@ metadata: used_env_vars: [] platforms: - linux-64 + - osx-arm64 - win-64 sources: - environment.yml @@ -345,23 +347,23 @@ package: manager: conda platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' - url: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2 + libgcc-ng: '>=12' + url: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda hash: - md5: a1fd65c7ccbf10880423d82bca54eb54 - sha256: cb521319804640ff2ad6a9f118d972ed76d86bea44e5626c09a13d38f562e1fa + md5: 69b8b6202a07720f448be700e300ccf4 + sha256: 242c0c324507ee172c0e0dd2045814e746bb303d1eb78870d182ceb0abc726a8 category: main optional: false - name: c-ares - version: 1.20.1 + version: 1.21.0 manager: conda platform: linux-64 dependencies: libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.20.1-hd590300_1.conda + url: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.21.0-hd590300_0.conda hash: - md5: 2facbaf5ee1a56967aecaee89799160e - sha256: 1700d9ebfd3b21c8b50e12a502f26e015719e1f3dbb5d491b5be061cf148ca7a + md5: c06fa0440048270817b9e3142cc661bf + sha256: dfe0e81d5462fced79fd0f99edeec94c9b27268cb04238638180981af2f889f1 category: main optional: false - name: gettext @@ -604,10 +606,10 @@ package: platform: linux-64 dependencies: libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-hcb278e6_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda hash: - md5: 681105bccc2a3f7f1a837d47d39c9179 - sha256: ccf61e61d58a8a7b2d66822d5568e2dc9387883dd9b2da61e1d787ece4c4979a + md5: 7dbaa197d7ba6032caf7ae7f32c1efa0 + sha256: 91cc03f14caf96243cead96c76fe91ab5925a695d892e83285461fb927dece5e category: main optional: false - name: openssl @@ -831,24 +833,24 @@ package: category: main optional: false - name: libnghttp2 - version: 1.52.0 + version: 1.55.1 manager: conda platform: linux-64 dependencies: - c-ares: '>=1.18.1,<2.0a0' + c-ares: '>=1.20.1,<2.0a0' libev: '>=4.33,<4.34.0a0' libgcc-ng: '>=12' libstdcxx-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - openssl: '>=3.0.8,<4.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.52.0-h61bc06f_0.conda + openssl: '>=3.1.4,<4.0a0' + url: https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.55.1-h47da74e_0.conda hash: - md5: 613955a50485812985c059e7b269f42e - sha256: ecd6b08c2b5abe7d1586428c4dd257dcfa00ee53700d79cdc8bca098fdfbd79a + md5: a802251d1eaeeae041c867faf0f94fa8 + sha256: 5e60b852dbde156ef1fa939af2491fe0e9eb3000de146786dede7cda8991ae4c category: main optional: false - name: libprotobuf - version: 4.24.3 + version: 4.24.4 manager: conda platform: linux-64 dependencies: @@ -856,10 +858,10 @@ package: libgcc-ng: '>=12' libstdcxx-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-4.24.3-hf27288f_1.conda + url: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-4.24.4-hf27288f_0.conda hash: - md5: 5097789a2bc83e697d7509df57f25bfd - sha256: 911ad483f051d96c9f07ecd8177546763c2da601e26941b434c3a09fa9fcd8f8 + md5: 1a0287ab734591ad63603734f923016b + sha256: 3e0f6454190abb27edd2aeb724688ee440de133edb02cbb17d5609ba36aa8be0 category: main optional: false - name: libre2-11 @@ -877,16 +879,16 @@ package: category: main optional: false - name: libsqlite - version: 3.43.2 + version: 3.44.0 manager: conda platform: linux-64 dependencies: libgcc-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.43.2-h2797004_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.44.0-h2797004_0.conda hash: - md5: 4b441a1ee22397d5a27dc1126b849edd - sha256: b30279b67fce2382a93c638625ff2b284324e2347e30bd0acab813d89289c18a + md5: b58e6816d137f3aabf77d341dd5d732b + sha256: 74ef5dcb900c38bec53140036e5e2a9cc7ffcd806da479ea2305f962a358a259 category: main optional: false - name: libssh2 @@ -991,10 +993,10 @@ package: dependencies: libgcc-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-h2797004_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h4845f30_101.conda hash: - md5: 513336054f884f95d9fd925748f41ef3 - sha256: 679e944eb93fde45d0963a22598fafacbb429bb9e7ee26009ba81c4e0c435055 + md5: d453b98d9c83e71da0741bb0ff4d76bc + sha256: e0569c9caa68bf476bead1bed3d79650bb080b532c64a4af7d8ca286c08dea4e category: main optional: false - name: ucx @@ -1058,7 +1060,7 @@ package: category: main optional: false - name: libglib - version: 2.78.0 + version: 2.78.1 manager: conda platform: linux-64 dependencies: @@ -1069,10 +1071,10 @@ package: libstdcxx-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' pcre2: '>=10.40,<10.41.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.78.0-hebfc3b9_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.78.1-hebfc3b9_0.conda hash: - md5: e618003da3547216310088478e475945 - sha256: 96ec4dc5e38f434aa5862cb46d74923cce1445de3cd0b9d61e3e63102b163af6 + md5: ddd09e8904fde46b85f41896621803e6 + sha256: 44c5f58593b074886436db7d13fdfcba2fe3731867ea52237f049b8400341a2b category: main optional: false - name: libhwloc @@ -1096,12 +1098,12 @@ package: dependencies: libabseil: '>=20230802.1,<20230803.0a0' libgcc-ng: '>=12' - libprotobuf: '>=4.24.3,<4.24.4.0a0' + libprotobuf: '>=4.24.4,<4.24.5.0a0' libstdcxx-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/libsentencepiece-0.1.99-h1462b79_4.conda + url: https://conda.anaconda.org/conda-forge/linux-64/libsentencepiece-0.1.99-h866249d_5.conda hash: - md5: 86d4be7aede4655b9750b3c3a840e206 - sha256: 62ee7930db0fc7e07e552c7a4f31c15c577f7735de8ab3f56c28420206fa5f9f + md5: 9085779608d2f81d39ebd26144cd8b6d + sha256: 0066690b5670f45abd3a2ec8dd6c4f2629b0a666c3b4293e460d1bb391e325f5 category: main optional: false - name: libthrift @@ -1140,16 +1142,16 @@ package: platform: linux-64 dependencies: libgcc-ng: '>=12' - libprotobuf: '>=4.24.3,<4.24.4.0a0' + libprotobuf: '>=4.24.4,<4.24.5.0a0' libstdcxx-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' lz4-c: '>=1.9.3,<1.10.0a0' snappy: '>=1.1.10,<2.0a0' zstd: '>=1.5.5,<1.6.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/orc-1.9.0-h208142c_3.conda + url: https://conda.anaconda.org/conda-forge/linux-64/orc-1.9.0-h4b38347_4.conda hash: - md5: f983ae19192439116ca5b5589560f167 - sha256: 591fbeb2cf01406f649bbc78c73da682bfb5e34375c63259748aabb6e6a8b38d + md5: f348d6a6bb3687dfead7c595f905732b + sha256: af3587f3b9a892be828d159b78379bdcd03b933c9fefddfcf105541421b77d48 category: main optional: false - name: python @@ -1310,15 +1312,15 @@ package: category: main optional: false - name: charset-normalizer - version: 3.3.1 + version: 3.3.2 manager: conda platform: linux-64 dependencies: python: '>=3.7' - url: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda hash: - md5: 985378f74689fccce52f158027bd9acd - sha256: a31739c49c4b1c8e0cbdec965ba152683d36ce6e23bdaefcfee99937524dabd1 + md5: 7f4a9e3fcff3f6356ae99244a014da6a + sha256: 20cae47d31fdd58d99c4d2e65fbdcefa0b0de0c84e455ba9d6356a4bdbc4b5b9 category: main optional: false - name: click @@ -1436,15 +1438,15 @@ package: category: main optional: false - name: filelock - version: 3.12.4 + version: 3.13.1 manager: conda platform: linux-64 dependencies: python: '>=3.7' - url: https://conda.anaconda.org/conda-forge/noarch/filelock-3.12.4-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/filelock-3.13.1-pyhd8ed1ab_0.conda hash: - md5: 5173d4b8267a0699a43d73231e0b6596 - sha256: 7463c64364c14b34a7a69a7550a880ccd1ec6d3014001e55913e6e4e8b0c7395 + md5: 0c1729b74a8152fde6a38ba0a2ab9f45 + sha256: 4d742d91412d1f163e5399d2b50c5d479694ebcd309127abb549ca3977f89d2b category: main optional: false - name: frozenlist @@ -1545,23 +1547,23 @@ package: category: main optional: false - name: libgrpc - version: 1.58.1 + version: 1.59.2 manager: conda platform: linux-64 dependencies: c-ares: '>=1.20.1,<2.0a0' libabseil: '>=20230802.1,<20230803.0a0' libgcc-ng: '>=12' - libprotobuf: '>=4.24.3,<4.24.4.0a0' + libprotobuf: '>=4.24.4,<4.24.5.0a0' libre2-11: '>=2023.6.2,<2024.0a0' libstdcxx-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - openssl: '>=3.1.3,<4.0a0' + openssl: '>=3.1.4,<4.0a0' re2: '' - url: https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.58.1-he06187c_2.conda + url: https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.59.2-hd6c4280_0.conda hash: - md5: 42f5e2ba0d41ba270afd3eb5c725ccf5 - sha256: c1b1324525df5376a5af8816a8174d9fcf0f748dd91fee89ecff8013fee5ec1c + md5: dd26e7127a7b08068b52181f47849f04 + sha256: 4ac31c7667fb0940856afc4b8ea58d8f1cb18db3cdf41729aa7d2c7f7a5e6429 category: main optional: false - name: markupsafe @@ -1656,15 +1658,15 @@ package: category: main optional: false - name: networkx - version: '3.2' + version: 3.2.1 manager: conda platform: linux-64 dependencies: python: '>=3.9' - url: https://conda.anaconda.org/conda-forge/noarch/networkx-3.2-pyhd8ed1ab_1.conda + url: https://conda.anaconda.org/conda-forge/noarch/networkx-3.2.1-pyhd8ed1ab_0.conda hash: - md5: 522039fb968d6d0a10e872e6f3856f53 - sha256: 857dc30c287f90da1dd1c0a781a5305abb92db900fd5675c8bdd16ae339abb45 + md5: 425fce3b531bed6ec3c74fab3e5f0a1c + sha256: 7629aa4f9f8cdff45ea7a4701fe58dccce5bf2faa01c26eb44cbb27b7e15ca9d category: main optional: false - name: ordered-set @@ -1680,17 +1682,17 @@ package: category: main optional: false - name: orjson - version: 3.9.8 + version: 3.9.10 manager: conda platform: linux-64 dependencies: libgcc-ng: '>=12' python: '>=3.10,<3.11.0a0' python_abi: 3.10.* - url: https://conda.anaconda.org/conda-forge/linux-64/orjson-3.9.8-py310h1e2579a_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/orjson-3.9.10-py310h1e2579a_0.conda 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https://conda.anaconda.org/conda-forge/win-64/pyarrow-13.0.0-py310hd0bb7c2_13_cpu.conda + url: https://conda.anaconda.org/conda-forge/win-64/pyarrow-13.0.0-py310hd0bb7c2_14_cpu.conda hash: - md5: ecfed43d7af893b49d3629882870aacc - sha256: c7d4f33f96e91d24208b09bf021edc68f6d4b9e1074505585b5614ed1498cdf8 + md5: e138efa5af03f8ee9bdcdaa6a7994722 + sha256: 1521cd7d79fa491c3b7d9c7dc6bec6f02ad34612144cf9b1bd12649c421a30c8 category: main optional: false - name: scikit-learn @@ -7779,39 +10983,39 @@ package: category: main optional: false - name: poetry - version: 1.6.1 + version: 1.7.0 manager: conda platform: win-64 dependencies: __win: '' python: '>=3.8,<4.0' tomli: '>=2.0.1,<3.0.0' - packaging: '>=20.4' + packaging: '>=20.5' importlib-metadata: '>=4.4' crashtest: '>=0.4.1,<0.5.0' pexpect: '>=4.7.0,<5.0.0' - cleo: '>=2.0.0,<3.0.0' trove-classifiers: '>=2022.5.19' dulwich: '>=0.21.2,<0.22.0' pkginfo: '>=1.9.4,<2.0' pyproject_hooks: '>=1.0.0,<2.0.0' - python-build: '>=0.10.0,<0.11.0' python-installer: '>=0.7.0,<0.8.0' platformdirs: '>=3.0.0,<4.0.0' requests-toolbelt: '>=0.9.1,<2' tomlkit: '>=0.11.4,<1.0.0' - virtualenv: '>=20.22.0,<21.0.0' shellingham: '>=1.5.0,<2.0.0' cachecontrol-with-filecache: '>=0.13.0,<0.14.0' - jsonschema: '>=4.10.0,<4.18.0' keyring: '>=24.0.0,<25.0.0' - poetry-core: 1.7.0 - poetry-plugin-export: '>=1.5.0,<2.0.0' requests: '>=2.26,<3.0' - url: https://conda.anaconda.org/conda-forge/noarch/poetry-1.6.1-win_pyh7428d3b_0.conda + cleo: '>=2.1.0,<3.0.0' + poetry-core: 1.8.1 + poetry-plugin-export: '>=1.6.0,<2.0.0' + python-build: '>=1.0.3,<2.0.0' + python-fastjsonschema: '>=2.18.0,<3.0.0' + virtualenv: '>=20.23.0,<21.0.0' + url: https://conda.anaconda.org/conda-forge/noarch/poetry-1.7.0-win_pyh7428d3b_0.conda hash: - md5: 44564fece6184bb43d39907de47f1b9a - sha256: 67d6adad590df3796261502bceccb6ef99ebc676f1ac00c87cfe8a19492b3cee + md5: 415d075755ea5362d80877ef20a1f730 + sha256: 786559ae179703a0ba644dbed7187a4969602e944144595bb151fcafc758ff0c category: main optional: false - name: pytorch @@ -7853,7 +11057,7 @@ package: category: main optional: false - name: accelerate - version: 0.23.0 + version: 0.24.1 manager: conda platform: win-64 dependencies: @@ -7863,10 +11067,10 @@ package: numpy: '>=1.17' python: '>=3.8.0' pytorch: '>=1.10.0' - url: https://conda.anaconda.org/conda-forge/noarch/accelerate-0.23.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/accelerate-0.24.1-pyhd8ed1ab_0.conda hash: - md5: 4fd8636954d48d7ac014a4110c887ab0 - sha256: 6ae9889df7b885dab3848d399758f5de0d9995b725c29546dde49546d2d4053e + md5: f145fda3d83dd29c8cdb5966bea45c56 + sha256: a897315648a9eeafaff6ca43d928c93801abbee2c3542ec17934a21ff055c1a4 category: main optional: false - name: evaluate @@ -7929,7 +11133,7 @@ package: category: main optional: false - name: transformers - version: 4.34.1 + version: 4.35.0 manager: conda platform: win-64 dependencies: @@ -7948,10 +11152,10 @@ package: datasets: '!=2.5.0' safetensors: '>=0.3.1' tokenizers: '>=0.14,<0.15' - url: https://conda.anaconda.org/conda-forge/noarch/transformers-4.34.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/transformers-4.35.0-pyhd8ed1ab_0.conda hash: - md5: 56eff02cf489a3324fdfc69b486e8d32 - sha256: b50103b6d7f216e2558a513c9144195c3d6102efeae6188500b1b796977d31dd + md5: d00f8b25d116ff7c5be94e7b3cf5c3d6 + sha256: 3836d0d338ce6a713b069270deaba44e352f587f09c02015aaa62e3f2ee375b6 category: main optional: false - name: pytorch-lightning diff --git a/environment.yml b/environment.yml index 2a72986..c1c9d1a 100644 --- a/environment.yml +++ b/environment.yml @@ -50,6 +50,6 @@ dependencies: # Non-standard section listing target platforms for conda-lock: platforms: - linux-64 - # - osx-arm64 # This is for M1/M2 MacBooks # Currently bugged, wait for mamba 1.5.3 release + - osx-arm64 # This is for M1/M2 MacBooks # Note: needs mamba 1.5.3 to work properly # - linux-aarch64 # This is linux-arm64. We can build Docker images for M1/M2 Macs on top of this - won't support MPS though - win-64 diff --git a/ppc64le.conda-lock.yml b/ppc64le.conda-lock.yml index eddc538..c4acc14 100644 --- a/ppc64le.conda-lock.yml +++ b/ppc64le.conda-lock.yml @@ -13,7 +13,7 @@ version: 1 metadata: content_hash: - linux-ppc64le: 3bde79658ef6f9ef80ddbedaf1254d39c0dcbab80734974885b4df4d49a3fbf7 + linux-ppc64le: 7c55d07494d2bdceb0f646d6780b95cc41a1b2c1169a0894fc55536cbe9a136e channels: - url: conda-forge used_env_vars: [] @@ -114,29 +114,17 @@ package: sha256: 0449138224adfa125b220154408419ec37c06b0b49f63c5954724325903ecf55 category: main optional: false -- name: libgomp - version: 13.2.0 - manager: conda - platform: linux-ppc64le - dependencies: - _libgcc_mutex: '0.1' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/libgomp-13.2.0-h31ea8bd_2.conda - hash: - md5: 8b04ef254cfdace8155918beb0410ccd - sha256: ea6f74a15d769c3a9664e867f33f2238855ba420e0c2f6e66e598afd656d29ab - category: main - optional: false - name: _openmp_mutex version: '4.5' manager: conda platform: linux-ppc64le dependencies: _libgcc_mutex: '0.1' - libgomp: '>=7.5.0' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/_openmp_mutex-4.5-2_gnu.tar.bz2 + llvm-openmp: '>=9.0.1' + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2 hash: - md5: 3e41cbaba7e4988d15a24c4e85e6171b - sha256: 4c89c2067cf5e7b0fbbdc3200c3f7affa5896e14812acf10f51575be87ae0c05 + md5: 72a771a227f989b269ebca2d4573c292 + sha256: 060d7d5fdea2922ea56cbb6d9db2d9a90e64eeb5963b0c8c506f31dbc13bad3f category: main optional: false - name: libgcc-ng @@ -177,15 +165,15 @@ package: category: main optional: false - name: c-ares - version: 1.19.1 + version: 1.20.1 manager: conda platform: linux-ppc64le dependencies: libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/c-ares-1.19.1-ha17a0cc_0.conda + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/c-ares-1.20.1-ha17a0cc_1.conda hash: - 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version: 3.1.3 + version: 3.1.4 manager: conda platform: linux-ppc64le dependencies: ca-certificates: '' libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/openssl-3.1.3-ha17a0cc_0.conda + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/openssl-3.1.4-ha17a0cc_0.conda hash: - md5: dc697363d1fe6b06a5c3a2ff6753b94c - sha256: aa50b480801c897caa8e7edfc72c4f19f11b16e43fe5a983f15818f38a82c568 + md5: 517057f310c4b9a452811fde9d3d58d9 + sha256: 450950359be06cf2c11b38108567cc883231c06a9cb73f0d40e0e0f85ba0665a category: main optional: false - name: pthread-stubs @@ -890,16 +878,16 @@ package: category: main optional: false - name: libsqlite - version: 3.43.0 + version: 3.43.2 manager: conda platform: linux-ppc64le dependencies: libgcc-ng: '>=12' libzlib: '>=1.2.13,<1.3.0a0' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/libsqlite-3.43.0-hd4bbf49_0.conda + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/libsqlite-3.43.2-hd4bbf49_0.conda hash: - 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name: virtualenv - version: 20.24.4 + version: 20.24.6 manager: conda platform: linux-ppc64le dependencies: @@ -3619,10 +3610,10 @@ package: filelock: <4,>=3.12.2 platformdirs: <4,>=3.9.1 python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/virtualenv-20.24.4-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/virtualenv-20.24.6-pyhd8ed1ab_0.conda hash: - md5: c3feaf947264a59a125e8c26e98c3c5a - sha256: 85c96449202ca87ec12783d8675b3655b4cd7b7afe49f2dc37d743adb0ed177f + md5: fb1fc875719e217ed799a7aae11d3be4 + sha256: 09492f89a22dc17d9b32f2a791deee93d06e99fb312c3d47430fe35343b7fbde category: main optional: false - name: wandb @@ -3669,6 +3660,27 @@ package: sha256: 0eca85917c38f0125ea9a21e556018ba98144f55495184bc23abb43dcb25b5b9 category: main optional: false +- name: blas + version: '2.119' + manager: conda + platform: linux-ppc64le + dependencies: + _openmp_mutex: '>=4.5' + blas-devel: 3.9.0 + libblas: 3.9.0 + libcblas: 3.9.0 + libgcc-ng: '>=12' + libgfortran-ng: '' + libgfortran5: '>=12.3.0' + liblapack: 3.9.0 + liblapacke: 3.9.0 + llvm-openmp: '>=17.0.2' + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/blas-2.119-openblas.conda + hash: + md5: b4e793c02eae60d4bd0ea7c2b967dc8d + sha256: d41d095a15c2ab9938ef7806d683db11fdb408125fbc15d0aea897e17094e2c1 + category: main + optional: false - name: cachecontrol-with-filecache version: 0.13.1 manager: conda @@ -3697,26 +3709,6 @@ package: sha256: cf9bc4c9356ad8eb68512446eebc076386f2bfb8ca86626e8796621bc5a13082 category: main optional: false -- name: dulwich - version: 0.21.6 - manager: conda - platform: linux-ppc64le - dependencies: - certifi: '' - cryptography: '>=1.3.4' - idna: '>=2.0.0' - libgcc-ng: '>=12' - pyopenssl: '>=0.14' - pysocks: '>=1.5.6,<2.0,!=1.5.7' - python: '>=3.10,<3.11.0a0' - python_abi: 3.10.* - urllib3: '' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/dulwich-0.21.6-py310h05217ba_0.conda - hash: - md5: 47764d46b123479185bfa06a3ceed882 - sha256: eb71bb846a17a3938d5cc64a33ea4b36c74086203369cf123e614206fbdb0794 - category: main - optional: false - name: keyring version: 24.2.0 manager: conda @@ -3778,6 +3770,23 @@ package: sha256: 5f99fe6a62d069b288b27732b9a88b755e07b19176a6a3c0c43f3e400f203c5f category: main optional: false +- name: tokenizers + version: 0.14.1 + manager: conda + platform: linux-ppc64le + dependencies: + huggingface_hub: '>=0.16.4,<0.18' + libgcc-ng: '>=12' + libstdcxx-ng: '>=12' + openssl: '>=3.1.3,<4.0a0' + python: '>=3.10,<3.11.0a0' + python_abi: 3.10.* + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/tokenizers-0.14.1-py310h53c5faf_2.conda + hash: + md5: 36f94b3da6310828a7290fd12790e965 + sha256: 9523b9226cd98c1e0df63b4e09fbaec88016dfb789da7376101f42820374953d + category: main + optional: false - name: libarrow version: 12.0.1 manager: conda @@ -3816,7 +3825,7 @@ package: manager: conda platform: linux-ppc64le dependencies: - __osx: '' + __linux: '' cachecontrol-with-filecache: '>=0.13.0,<0.14.0' cleo: '>=2.0.0,<3.0.0' crashtest: '>=0.4.1,<0.5.0' @@ -3841,11 +3850,10 @@ package: tomlkit: '>=0.11.4,<1.0.0' trove-classifiers: '>=2022.5.19' virtualenv: '>=20.22.0,<21.0.0' - xattr: '>=0.10.0,<0.11.0' - url: https://conda.anaconda.org/conda-forge/noarch/poetry-1.6.1-osx_pyh534df25_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/poetry-1.6.1-linux_pyha804496_0.conda hash: - md5: b90f6dda7d0ab2e579679f8f5225f042 - sha256: 9f87ac0f6aadc3238871fdb06c6bb5d4303cc3ac449184b0f8dbae3605d2bd1d + md5: 1f8c070d45c3bf19b7201bc3f6843f14 + sha256: fcd090dab644685df5b0114cf74d8e724a2c280105163bae553400f009084367 category: main optional: false - name: pytorch-base @@ -3888,7 +3896,7 @@ package: category: main optional: false - name: scikit-learn - version: 1.3.1 + version: 1.3.2 manager: conda platform: linux-ppc64le dependencies: @@ -3901,10 +3909,10 @@ package: python_abi: 3.10.* scipy: '' threadpoolctl: '>=2.0.0' - url: https://conda.anaconda.org/conda-forge/linux-ppc64le/scikit-learn-1.3.1-py310h42bb3b2_1.conda + url: https://conda.anaconda.org/conda-forge/linux-ppc64le/scikit-learn-1.3.2-py310h42bb3b2_1.conda hash: - md5: 04ebd528fea670d470ae038371fdc8b6 - sha256: e2dbfd88f9f4aa872398f124033a44098789cc337fe949c5a3a9b8c1b2bf0160 + md5: 60d939038befcd46078031003dde8b19 + sha256: 895864784ddab26cb48400cc6ae2ca79c3f5b965d753452c3dcf7955a8af787a category: main optional: false - name: inquirer @@ -3979,13 +3987,13 @@ package: category: main optional: false - name: datasets - version: 2.14.5 + version: 2.14.6 manager: conda platform: linux-ppc64le dependencies: aiohttp: '' dill: '>=0.3.0,<0.3.8' - fsspec: '>=2023.1.0,<2023.9.0' + fsspec: '>=2023.1.0,<=2023.10.0' huggingface_hub: '>=0.14.0,<1.0.0' importlib-metadata: '' multiprocess: '' @@ -3998,14 +4006,14 @@ package: pyyaml: '>=5.1' requests: '>=2.19.0' tqdm: '>=4.62.1' - url: https://conda.anaconda.org/conda-forge/noarch/datasets-2.14.5-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/datasets-2.14.6-pyhd8ed1ab_0.conda hash: - md5: 3bec9fb1eeef5a6e316011f2a3543ffd - sha256: d3ecb2e0fbcec7fd6825cf032190eec6a0aa9c575498dcb71db96acedfb730d7 + md5: 0e011ab75c4c93d15668368b4b0e0111 + sha256: fe6d93c4260c70817b9b31e178acb94562d6831bacbab3f771f5733008db6719 category: main optional: false - name: evaluate - version: 0.4.0 + version: 0.4.1 manager: conda platform: linux-ppc64le dependencies: @@ -4024,14 +4032,14 @@ package: requests: '>=2.19.0' responses: <0.19 tqdm: '>=4.62.1' - url: https://conda.anaconda.org/conda-forge/noarch/evaluate-0.4.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/evaluate-0.4.1-pyhd8ed1ab_0.conda hash: - md5: 0f3e671cc82e8147d2c51dc549767edd - sha256: 1b65170a7f6b431d98aa2ff6c23609a7b5a8f5c9f05f8b9d7ae7f134e26a508a + md5: ea228540526db4dde8ad8f2309bc1d40 + sha256: f0b0af68fbd94a22c13f995155d3496c87edc481aee5c624abde94413cb51bd6 category: main optional: false - name: transformers - version: 4.33.3 + version: 4.34.1 manager: conda platform: linux-ppc64le dependencies: @@ -4047,13 +4055,13 @@ package: regex: '!=2019.12.17' requests: '' sacremoses: '' - safetensors: '' - tokenizers: '>=0.11.1,!=0.11.3,<0.14' + safetensors: '>=0.3.1' + tokenizers: '>=0.14,<0.15' tqdm: '>=4.27' - url: https://conda.anaconda.org/conda-forge/noarch/transformers-4.33.3-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/transformers-4.34.1-pyhd8ed1ab_0.conda hash: - md5: 45e7cade6c2acdba6441e6370edfbc1e - sha256: a3140aff6c16e1e139d29b046c0d3df2a7ca9be38b253e4d6d48699b605e1824 + md5: 56eff02cf489a3324fdfc69b486e8d32 + sha256: b50103b6d7f216e2558a513c9144195c3d6102efeae6188500b1b796977d31dd category: main optional: false - name: accelerate @@ -4146,30 +4154,30 @@ package: category: main optional: false - name: pytorch-lightning - version: 2.0.9 + version: 2.1.0 manager: conda platform: linux-ppc64le dependencies: fsspec: '>2021.06.0' - lightning-utilities: '>=0.7.0' + lightning-utilities: '>=0.8.0' numpy: '>=1.17.2' - packaging: '>=17.1' + packaging: '>=20.0' python: '>=3.8' - pytorch: '>=1.11.0' + pytorch: '>=1.12.0' pyyaml: '>=5.4' requests: '' torchmetrics: '>=0.7.0' tqdm: '>=4.57.0' typing-extensions: '>=4.0.0' typing_extensions: '>=4.0.0' - url: https://conda.anaconda.org/conda-forge/noarch/pytorch-lightning-2.0.9-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/pytorch-lightning-2.1.0-pyhd8ed1ab_0.conda hash: - md5: 3e96ed529412338e38af9004e22267de - sha256: 7e91f3c0695b6f36bc44c83f30d1f39ccd97cf5c81c36876926daa3f62fb1b09 + md5: 2049b36b43c74d1878443b18526a0bbd + sha256: c7128e164260a35979a0f7b3a382c28d8ed9dfacb809210f2537129597375141 category: main optional: false - name: lightning - version: 2.0.9.post0 + version: 2.1.0 manager: conda platform: linux-ppc64le dependencies: @@ -4181,20 +4189,20 @@ package: dateutils: <2.0 deepdiff: <8.0,>=5.7.0 fastapi: <2.0,>=0.92.0 - fsspec: <2025.0,>=2022.5.0 + fsspec: <2025.0,>2021.06.0 inquirer: <5.0,>=2.10.0 jinja2: <5.0 lightning-cloud: '>=0.5.38' - lightning-utilities: <2.0,>=0.7.0 + lightning-utilities: <2.0,>=0.8.0 numpy: <3.0,>=1.17.2 - packaging: '' + packaging: <25.0,>=20.0 psutil: <7.0 pydantic: <2.2.0,>=1.7.4 python: '>=3.8' python-multipart: <2.0,>=0.0.5 - pytorch: <4.0,>=1.11.0 + pytorch: <4.0,>=1.12.0 pytorch-lightning: '' - pyyaml: <8.0 + pyyaml: <8.0,>=5.4 requests: <4.0 rich: <15.0,>=12.3.0 starlette: '' @@ -4207,10 +4215,10 @@ package: uvicorn: <2.0 websocket-client: <3.0 websockets: <13.0 - url: https://conda.anaconda.org/conda-forge/noarch/lightning-2.0.9.post0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/lightning-2.1.0-pyhd8ed1ab_0.conda hash: - md5: 176e3200b742c487e3e42717081d502b - sha256: 168206b0c49063854a93b7546883c0327d4e6b4e147b6d2aa889db8c335a28bb + md5: d5789fcb43c39632347d7a86cd6ec474 + sha256: 5754b56ca596b98192ea26e8bde1f0aa7a9d95c07e15223adf17229e94f4577a category: main optional: false - name: argcomplete @@ -4243,16 +4251,6 @@ package: sha256: d1679b86250d269d06a99670924d6bce45adc00b08069dae8c47d98e89b667a9 category: main optional: false -- name: warmup-scheduler - version: '0.3' - manager: pip - platform: linux-ppc64le - dependencies: {} - url: https://files.pythonhosted.org/packages/00/39/f77fb5a7a572891c1f4df1d8e1373a1380cb6d861933886334553244d002/warmup_scheduler-0.3.tar.gz - hash: - sha256: 63624cf5010772252c530ceb1a64e3fd60e3ee54264054da389f1b421089b714 - category: main - optional: false - name: print-on-steroids version: 1.2.3 manager: pip diff --git a/ppc64le.environment.yml b/ppc64le.environment.yml index 6f0cafb..5f1e4ec 100644 --- a/ppc64le.environment.yml +++ b/ppc64le.environment.yml @@ -38,7 +38,6 @@ dependencies: - pip - pip: - pipx - - warmup-scheduler - simple_parsing - print-on-steroids[exceptions] From c43bcb1190e64720f7a97e0a70102d7b541b5103 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:22:31 +0100 Subject: [PATCH 06/15] more README --- .github/workflows/docker.yml | 5 +++-- README.md | 6 +++--- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index de3048c..75fabe9 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -31,8 +31,8 @@ jobs: - name: Login to Docker Hub uses: docker/login-action@v2 with: - registry: ${{secrets.DOCKER_REGISTRY}} - username: ${{secrets.DOCKER_REGISTRY_USERNAME}} + registry: ${{secrets.DOCKER_REGISTRY}} # if not set, default to Docker Hub + username: konstantinjdobler # change this password: ${{secrets.DOCKER_REGISTRY_TOKEN}} - name: Get torch version for amd run: "echo TORCH_VERSION_AMD=$(cat conda-lock.yml | grep -E -A 4 'name: pytorch$' | @@ -46,5 +46,6 @@ jobs: context: . platforms: linux/amd64 push: true + # change these tags to match your Docker Hub repo tags: konstantinjdobler/nlp-research-template:pytorch${{env.TORCH_VERSION_AMD}}-cuda${{env.CUDA_VERSION_AMD}}, konstantinjdobler/nlp-research-template:latest \ No newline at end of file diff --git a/README.md b/README.md index a00b21d..c433296 100644 --- a/README.md +++ b/README.md @@ -215,7 +215,6 @@ After having installed the [Remote-SSH-](https://code.visualstudio.com/docs/remo There is a bit of setup: for a proper dev environment, you will need to configure mounts (cache directories, your datasets, ...) and environment variables like for a regular docker run command, have a look inside [`.devcontainer/devcontainer.json`](.devcontainer/devcontainer.json). - `conda-lock` is automatically installed for you but you have to add the `--micromamba` flag inside the Dev Container (e.g. `conda-lock --micromamba -f environment.yml`). Otherwise, conda-lock uses an anaconda installation, which takes over 8 hours to resolve the packages in the environments. We automatically mount the `~/.gitconfig` and `~/.netrc` files for ease of use of Git and W&B, however these files have to exist on your host machine. They are created when executing `git config --global user.email your.name@domain.com` and `wandb login`, respectively. @@ -233,7 +232,6 @@ Sometimes it's just quicker or unavoidable to create an environment via `conda-l We use the `ruff` linter and `black` formatter. You should install their VS Code extensions and enable "Format on Save" inside VS Code. - ## Continuous Integration and Deployment Our project uses GitHub Actions for CI/CD to automate the building and pushing of our Docker images to Docker Hub. This ensures that our Docker images are always up-to-date with the latest dependencies specified in `conda-lock.yml`. @@ -244,8 +242,10 @@ To work with this CI/CD setup, you need to: - Set the following secrets in your GitHub repository: - `DOCKER_REGISTRY`: The Docker registry URL (if using Docker Hub, this is not needed). - - `DOCKER_REGISTRY_USERNAME`: Your Docker Hub username. - `DOCKER_REGISTRY_TOKEN`: Your Docker Hub access token or password. +- Replace `konstantinjdobler` and mentions of `nlp-research-template` with your own Docker ID in the workflow file [`.github/workflows/docker.yml`](./.github/workflows/docker.yml) + +If you do not want to automatically build and push images, just delete the workflow file. ### How to Update Docker Images From 15c4482a479b85af9cb6ff1f1240049ba29272b9 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:28:54 +0100 Subject: [PATCH 07/15] trigger job --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index c1c9d1a..a2ef5bb 100644 --- a/environment.yml +++ b/environment.yml @@ -14,6 +14,7 @@ dependencies: # CUDA only on linux and windows - pytorch::pytorch-cuda=11.8 # [linux] - pytorch::pytorch-cuda=11.8 # [win] + - wandb - lightning - transformers From 9ac6c0003b0e30096e0d6904e84ccc54b2c6dc09 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:30:00 +0100 Subject: [PATCH 08/15] add reproducible --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c433296..1770fd0 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# An opinionated template for NLP research code +# An opinionated template for reproducible NLP research code [![Docker Hub](https://img.shields.io/docker/v/konstantinjdobler/nlp-research-template/latest?color=blue&label=docker&logo=docker)](https://hub.docker.com/r/konstantinjdobler/nlp-research-template/tags) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) From 0b5b3d102e118e5cd8af50b3357f2cbcdc9ba93b Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Mon, 6 Nov 2023 18:31:30 +0100 Subject: [PATCH 09/15] trigger job + comment --- Dockerfile | 1 + 1 file changed, 1 insertion(+) diff --git a/Dockerfile b/Dockerfile index 4931c54..d526ed0 100644 --- a/Dockerfile +++ b/Dockerfile @@ -114,6 +114,7 @@ RUN --mount=type=cache,target=$MAMBA_ROOT_PREFIX/pkgs,id=conda-$TARGETPLATFORM,u micromamba install --name base --yes --file /locks/conda-lock.yml # Install optional tricky pip dependencies that do not work with conda-lock +# --no-deps --no-cache-dir to prevent conflicts with micromamba, might have to remove it depending on your use case # RUN micromamba run -n research pip install example-dependency --no-deps --no-cache-dir From 2fed00745b404ac7af78daaaa70afe2315ef89dc Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 10:15:30 +0100 Subject: [PATCH 10/15] Use Python to extract version info --- .github/scripts/extract_version_info.py | 29 +++++++++++++++++++++++++ .github/workflows/docker.yml | 11 +++++----- 2 files changed, 35 insertions(+), 5 deletions(-) create mode 100644 .github/scripts/extract_version_info.py diff --git a/.github/scripts/extract_version_info.py b/.github/scripts/extract_version_info.py new file mode 100644 index 0000000..378d616 --- /dev/null +++ b/.github/scripts/extract_version_info.py @@ -0,0 +1,29 @@ +#!/usr/bin/env python3 +import sys +import yaml + +if len(sys.argv) != 2: + print("Usage: python extract_pytorch_version.py ") + sys.exit(1) + +package_name = sys.argv[1] + +# Load the lock file +try: + with open('conda-lock.yml', 'r') as lock_file: + lock_data = yaml.safe_load(lock_file) +except FileNotFoundError: + print("Lock file 'conda-lock.yml' not found.") + sys.exit(1) + +# Extract the version of the specified package +package_version = None +for package in lock_data['package']: + if package['name'] == package_name and package['platform'] == 'linux-64': + package_version = package['version'] + break + +if package_version: + print(package_version) +else: + print(f"{package_name}-not-found") diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 75fabe9..3a19563 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -35,11 +35,13 @@ jobs: username: konstantinjdobler # change this password: ${{secrets.DOCKER_REGISTRY_TOKEN}} - name: Get torch version for amd - run: "echo TORCH_VERSION_AMD=$(cat conda-lock.yml | grep -E -A 4 'name: pytorch$' | - tail -n1 | grep -Eo [0-9]+.[0-9]+.[0-9]+) >> $GITHUB_ENV" + run: "echo TORCH_VERSION_AMD=$(.github/scripts/release.py pytorch) >> $GITHUB_ENV" - name: Get cuda version for amd - run: "echo CUDA_VERSION_AMD=$(cat conda-lock.yml | grep -E -A 4 'name: - pytorch-cuda$' | tail -n1 | grep -Eo [0-9]+.[0-9]+) >> $GITHUB_ENV" + run: "echo CUDA_VERSION_AMD=$(.github/scripts/release.py pytorch-cuda) >> $GITHUB_ENV" + - name: Print version info + run: | + echo "TORCH_VERSION_AMD=$TORCH_VERSION_AMD" + echo "CUDA_VERSION_AMD=$CUDA_VERSION_AMD" - name: Build and push AMD uses: docker/build-push-action@v4 with: @@ -48,4 +50,3 @@ jobs: push: true # change these tags to match your Docker Hub repo tags: konstantinjdobler/nlp-research-template:pytorch${{env.TORCH_VERSION_AMD}}-cuda${{env.CUDA_VERSION_AMD}}, konstantinjdobler/nlp-research-template:latest - \ No newline at end of file From 5205b7c55705f06f02d1a014a4fb6d91ac97834c Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 10:19:40 +0100 Subject: [PATCH 11/15] trigger job --- Dockerfile | 3 +++ 1 file changed, 3 insertions(+) diff --git a/Dockerfile b/Dockerfile index d526ed0..f414e78 100644 --- a/Dockerfile +++ b/Dockerfile @@ -57,6 +57,8 @@ COPY ppc64le.conda-lock.yml /locks/conda-lock.yml # ----------------- ARG TARGETARCH FROM ${TARGETARCH}${OS_SELECTOR} as nvidia-cuda-with-micromamba + +# --------- # From https://github.com/mamba-org/micromamba-docker#adding-micromamba-to-an-existing-docker-image # The commands below add micromamba to an existing image to give the capability to ad-hoc install new dependencies USER root @@ -93,6 +95,7 @@ ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"] # You can modify the CMD statement as needed.... CMD ["/bin/bash"] +# ------------ ############################################################ From 8de8a1b451d366e3f81cf7fb14b651cd307919cb Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 10:26:23 +0100 Subject: [PATCH 12/15] fix script name --- .github/workflows/docker.yml | 4 ++-- Dockerfile | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 3a19563..b91d81d 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -35,9 +35,9 @@ jobs: username: konstantinjdobler # change this password: ${{secrets.DOCKER_REGISTRY_TOKEN}} - name: Get torch version for amd - run: "echo TORCH_VERSION_AMD=$(.github/scripts/release.py pytorch) >> $GITHUB_ENV" + run: "echo TORCH_VERSION_AMD=$(.github/scripts/extract_version_info.py pytorch) >> $GITHUB_ENV" - name: Get cuda version for amd - run: "echo CUDA_VERSION_AMD=$(.github/scripts/release.py pytorch-cuda) >> $GITHUB_ENV" + run: "echo CUDA_VERSION_AMD=$(.github/scripts/extract_version_info.py pytorch-cuda) >> $GITHUB_ENV" - name: Print version info run: | echo "TORCH_VERSION_AMD=$TORCH_VERSION_AMD" diff --git a/Dockerfile b/Dockerfile index f414e78..e443a66 100644 --- a/Dockerfile +++ b/Dockerfile @@ -145,4 +145,4 @@ USER $MAMBA_USER ARG MAMBA_DOCKERFILE_ACTIVATE=1 RUN micromamba config prepend channels conda-forge --env # Disable micromamba banner at every command -RUN micromamba config set show_banner false --env \ No newline at end of file +RUN micromamba config set show_banner false --env From b1c5d1c847e39b180e19a8bd79d5032d2850fc9e Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 10:32:39 +0100 Subject: [PATCH 13/15] make script executable --- .github/scripts/extract_version_info.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) mode change 100644 => 100755 .github/scripts/extract_version_info.py diff --git a/.github/scripts/extract_version_info.py b/.github/scripts/extract_version_info.py old mode 100644 new mode 100755 From 062cdabb46347ebb477a747676201c43c04baae6 Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 10:33:02 +0100 Subject: [PATCH 14/15] trigger job --- Dockerfile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index e443a66..ec13e66 100644 --- a/Dockerfile +++ b/Dockerfile @@ -13,7 +13,6 @@ ARG OS_SELECTOR=ubi8 # Load micromamba container to copy from later FROM --platform=$TARGETPLATFORM mambaorg/micromamba:1.5.1 as micromamba - #################################################### ################ BASE IMAGES ####################### #################################################### @@ -145,4 +144,4 @@ USER $MAMBA_USER ARG MAMBA_DOCKERFILE_ACTIVATE=1 RUN micromamba config prepend channels conda-forge --env # Disable micromamba banner at every command -RUN micromamba config set show_banner false --env +RUN micromamba config set show_banner false --env \ No newline at end of file From 09d8c94e49e1ddf85a2f2aeceb42f8ce0fd5be5a Mon Sep 17 00:00:00 2001 From: Konstantin Dobler Date: Tue, 7 Nov 2023 11:04:30 +0100 Subject: [PATCH 15/15] add git tag to docker --- .github/workflows/docker.yml | 2 +- Dockerfile | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index b91d81d..4e129d6 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -49,4 +49,4 @@ jobs: platforms: linux/amd64 push: true # change these tags to match your Docker Hub repo - tags: konstantinjdobler/nlp-research-template:pytorch${{env.TORCH_VERSION_AMD}}-cuda${{env.CUDA_VERSION_AMD}}, konstantinjdobler/nlp-research-template:latest + tags: konstantinjdobler/nlp-research-template:pytorch${{env.TORCH_VERSION_AMD}}-cuda${{env.CUDA_VERSION_AMD}}, konstantinjdobler/nlp-research-template:latest, konstantinjdobler/nlp-research-template:git-${{ github.sha }} diff --git a/Dockerfile b/Dockerfile index ec13e66..5885b28 100644 --- a/Dockerfile +++ b/Dockerfile @@ -144,4 +144,4 @@ USER $MAMBA_USER ARG MAMBA_DOCKERFILE_ACTIVATE=1 RUN micromamba config prepend channels conda-forge --env # Disable micromamba banner at every command -RUN micromamba config set show_banner false --env \ No newline at end of file +RUN micromamba config set show_banner false --env