fastq format

[oliverP222]

using MitoZ in Docker, works well with my fastq.gz files but when I download from SRA, these reads fail. Looking at the output, the cleaned sequence file is empty. I assume there is some format issue between archived .fastq.gz files and what you get directly from Illumina sequencers. Any help would be greatly appreciated.

[linzhi2013]

You can compare the formats of your fastq.gz files and the archived fastq.gz files, and ask ChatGPT to write a script for the format conversion.

Best