git.md

Apply patch

git apply patch filename, where filename is a .patch file. E.g.:

git apply patch biomasspy.patch

Archive export

git archive --format tar.gz --output filename --prefix prefix branch

E.g.:

$ git archive --format tar.gz --output ~/sara-config.tar.gz --prefix sara-config/ master

Delete branches

Delete branch locally:

git branch -d localBranchName

Delete branch remotely:

git push origin --delete remoteBranchName

How to tell which commit a tag points to in Git?

git log tagname

or:

git rev-list tagname

List files being tracked

To list files being tracked under branch branch:

git ls-tree -r branch --name-only

E.g.:

git ls-tree -r master --name-only

Notebooks repository

Workflow:

1. Update notebook on branch. Clear outputs and save.
2. Commit and push.
3. Change to master.
4. Rebase.
5. Execute notebook.
6. Commit with --amend option.
7. Force push.

Rebasing after modifying a notebook:

git rebase -X ours branch

E.g.:

$ git rebase -X ours development

Commit with --amend option:

git commit -a --amend -m comment

E.g.:

$ git commit -a --amend -m 'Notebook re-executed'

Force push:

git push --force

Reset repository

$ git reset --hard