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base repository: marschall-lab/panacus
base: 0.2
head repository: marschall-lab/panacus
compare: main
Commits on May 19, 2023
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Dany Doerr committed
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Commits on May 22, 2023
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Commits on May 23, 2023
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Dany Doerr committed
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fix bug in ordered histgraph and improve interface
Dany Doerr committedMay 23, 2023 Configuration menu - View commit details
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fix bugs when estimating heaps parameters
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Commits on May 30, 2023
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implemented new storage-efficient data structure for storing group-ba…
…sed table
Dany Doerr committedMay 30, 2023 Configuration menu - View commit details
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Commits on Jun 2, 2023
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finished implementation of column-row-values formatted group-based table
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change r vector to usize (because it points to intervals in c/v vecto…
…rs, which can become *really* big)
Daniel Doerr committedJun 2, 2023 Configuration menu - View commit details
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improve code regarding matplotlib warning
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Commits on Jun 5, 2023
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added separate order option, so that one can use different levels for…
… order and subset
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Commits on Jun 6, 2023
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fixed bug in subsetting with coords, added convenience option for gro…
…upby-haplotype and groupby-sample
Daniel Doerr committedJun 6, 2023 Configuration menu - View commit details
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Commits on Jun 7, 2023
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fix index issue in ordered-histgrowth and table
Dany Doerr committedJun 7, 2023 Configuration menu - View commit details
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more fixes to the calculation of ordered-histgrowth
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Daniel Doerr committed
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fix index issue in edge table output
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Commits on Jun 8, 2023
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fixing several bugs in subsetting bp with coordinates
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Merge branch 'main' of git.hhu.de:medbio/research/pgr into main
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Commits on Jun 9, 2023
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fix bug in checking for grouping settings
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exclude exclusion paths in hist/growth output
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updated figure includes example on coverage thresholding
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fix inverted exclusion statement
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Updated README--added recipe for ordered histgrowth plot
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fix bug in part that flags excluded nodes
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bump up version number, merge README from github, fix issues in the R…
…EADME
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bump up version number, merge README from github, fix issues in the R…
…EADME
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Commits on Jun 13, 2023
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fixed issue with repeated edges
Dany Doerr committedJun 13, 2023 Configuration menu - View commit details
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make sure uncovered edge count is correct even in presence of duplica…
…ted edges
Dany Doerr committedJun 13, 2023 Configuration menu - View commit details
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Commits on Jun 15, 2023
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Commits on Jun 16, 2023
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Commits on Jun 17, 2023
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Merge pull request #6 from AndreaGuarracino/check_both_start_and_end
check both start and end for `coords`
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Commits on Jun 18, 2023
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Fixes issue described in #6, this time for real
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Merge branch 'main' of github.com:marschall-lab/panacus
Dany Doerr committedJun 18, 2023 Configuration menu - View commit details
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Commits on Aug 19, 2023
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made it possible to compute stats for all count types at once and out…
…put both hist and growth at once
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Commits on Aug 20, 2023
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ensure that output has *always* 4 header lines
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adjusted panacus-visualize to new table format
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new implementation of reading in hist tables that supports multiple h…
…istograms
Dany Doerr committedAug 20, 2023 Configuration menu - View commit details
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Commits on Aug 21, 2023
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no alpha curve when estimate_growth disabled
Dany Doerr committedAug 21, 2023 Configuration menu - View commit details
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moving write stuff into dedicated functions of crate::io
Dany Doerr committedAug 21, 2023 Configuration menu - View commit details
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Commits on Aug 23, 2023
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implemented html output for panacus
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added missing html files, minified some
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