setup.py

from setuptools import setup, find_packages

setup(
    name='scUNAGI',
    version='0.5.1',
    
    long_description=open('README.md').read(),
    packages=find_packages(),
    package_data={'UNAGI': ['data/*.npy','data/*.txt']},
    long_description_content_type='text/markdown',
    install_requires=[
    'h5py>=3.9.0',
    'idna>=3.4',
    'igraph>=0.10.7',
    'igraph<=0.11',
    'networkx>=3.1',
    'numba>=0.57.1',
    'pandas>2.0.0',
    'parso>=0.8.3',
    'pillow>=9.4.0',
    'pip>=23.2.1',
    'psutil>=5.9.5',
    'ptyprocess>=0.7.0',
    'pure_eval>=0.2.2',
    'pycparser>=2.21',
    'pygments>=2.16.1',
    'pynndescent>=0.5.10',
    'pyopenssl>=23.2.0',
    'pyparsing>=3.1.1',
    'pysocks>=1.7.1',
    'sphinx>=5.0',
    'python-dateutil>=2.8.2',
    'python-igraph>=0.10.8',
    'pytz>=2023.3.post1',
    'pyzmq>=25.1.1',
    'lightning==2.0.8',
    'numpyro==0.13.0',
    'requests>=2.31.0',
    'anndata==0.8.0',
    'scanpy>=1.9.5',
    'jax==0.4.20',
    'jaxlib==0.4.20',
    'scikit-learn>=1.3.0',
    'scipy>=1.9.3',
    'seaborn>=0.12.2',
    'setuptools>=68.0.0',
    'six>=1.16.0',
    'numpy==1.24.4',
    'stack_data>=0.6.2',
    'statsmodels>=0.14.0',
    'stdlib-list>=0.8.0',
    'sympy>=1.11.1',
    'tbb>=2021.8.0',
    'texttable>=1.6.7',
    'threadpoolctl>=3.2.0',
    'torch==2.0.0',
    'torchaudio>=2.0.0',
    'torchvision>=0.15.0',
    'tornado>=6.3.3',
    'tqdm>=4.66.1',
    'traitlets>=5.9.0',
    'typing_extensions>=4.7.1',
    'tzdata>=2023c',
    'umap-learn>=0.5.3',
    'wcwidth>=0.2.6',
    'wheel>=0.38.4',
    'pyro-ppl>=1.8.6',
    'scvi-tools>=1.0.3',
    'leidenalg>=0.10.1',
    'recommonmark'
    ],
    include_package_data=True,
    author='Yumin Zheng',
    author_email='yumin.zheng@mail.mcgill.ca',
    description='UNAGI: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases',
    url='https://github.com/mcgilldinglab/UNAGI',
)