From f753a200aff5e1731640040f7d28b3a0f0f8cae2 Mon Sep 17 00:00:00 2001 From: Fabrice Normandin Date: Mon, 21 Oct 2024 09:14:43 -0400 Subject: [PATCH] Switch to [uv](https://docs.astral.sh/uv/) (#71) * Switch to [uv](https://docs.astral.sh/uv/) Signed-off-by: Fabrice Normandin * Fix mkdocs and build.yml issue Signed-off-by: Fabrice Normandin * Fix issue with check_docs workflow Signed-off-by: Fabrice Normandin * Add missing mkdocstrings to default deps Signed-off-by: Fabrice Normandin * Update changed values in regression file Signed-off-by: Fabrice Normandin * Add xfail on rye-related tests Signed-off-by: Fabrice Normandin --------- Signed-off-by: Fabrice Normandin --- .devcontainer/devcontainer.json | 15 +- .github/workflows/build.yml | 53 +- .github/workflows/docs.yml | 17 +- .pre-commit-config.yaml | 3 +- .../albert_base_v2_hf_text_hf_example.yaml | 70 +- docs/install.md | 9 +- project/utils/auto_schema_test.py | 6 + pyproject.toml | 48 +- requirements-dev.lock | 787 --- requirements.lock | 738 --- scripts/mila_setup.sh | 27 +- uv.lock | 4664 +++++++++++++++++ 12 files changed, 4793 insertions(+), 1644 deletions(-) delete mode 100644 requirements-dev.lock delete mode 100644 requirements.lock create mode 100644 uv.lock diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index de14439b..a50ba65c 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -6,11 +6,16 @@ "image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye", // Features to add to the dev container. More info: https://containers.dev/features. "features": { - "ghcr.io/devcontainers-contrib/features/pre-commit:2": {}, + "ghcr.io/devcontainers-contrib/features/pre-commit:2": { + "version": "3.8.0" + }, "ghcr.io/devcontainers-contrib/features/apt-get-packages": { - "packages": "vim" + "packages": [ + "vim", + "sshfs" + ] }, - "ghcr.io/e-gineering/devcontainer-features/rye:1": {} + "ghcr.io/va-h/devcontainers-features/uv:1": {} }, // Use 'forwardPorts' to make a list of ports inside the container available locally. // "forwardPorts": [], @@ -74,7 +79,6 @@ "SCRATCH": "/home/vscode/scratch", "SLURM_TMPDIR": "/tmp", "NETWORK_DIR": "/network", - // used by rye (fixed issues with symlinked .cache dir to $SCRATCH) "UV_LINK_MODE": "symlink" }, "mounts": [ @@ -110,8 +114,7 @@ "pre-commit": "pre-commit install --install-hooks" }, "updateContentCommand": { - // BUG: doesn't work atm. Perhaps some permission issues? - // "Sync dependencies": "rye sync --all-features" + "Sync dependencies": "uv sync --frozen" }, // Use 'postCreateCommand' to run commands after the container is created. "postCreateCommand": { diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index cc1af5f7..7468c77f 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -38,17 +38,18 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - name: Setup Rye with caching of venvs - uses: eifinger/setup-rye@v4 - id: setup-rye + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: + version: "latest" enable-cache: true + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token github-token: ${{ secrets.GITHUB_TOKEN }} - cache-prefix: "3.10" + cache-suffix: "3.10" - name: Install dependencies - run: rye sync --no-lock --features=docs + run: uv sync --frozen --extra docs - name: Build the documentation (strict mode) - run: rye run mkdocs build --strict + run: uv run mkdocs build --strict unit_tests: needs: [linting] @@ -60,21 +61,22 @@ jobs: python-version: ["3.10"] steps: - uses: actions/checkout@v4 - - name: Setup Rye with caching of venvs - uses: eifinger/setup-rye@v4 - id: setup-rye + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: + version: "latest" enable-cache: true + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token github-token: ${{ secrets.GITHUB_TOKEN }} - cache-prefix: ${{ matrix.python-version }} + cache-suffix: ${{ matrix.python-version }} - name: Pin python-version ${{ matrix.python-version }} - run: rye pin ${{ matrix.python-version }} + run: uv python pin ${{ matrix.python-version }} - name: Install dependencies - run: rye sync --no-lock + run: uv sync --frozen - name: Test with pytest env: JAX_PLATFORMS: cpu - run: rye run pytest -v --cov=project --cov-report=xml --cov-append --skip-if-files-missing + run: uv run pytest -v --cov=project --cov-report=xml --cov-append --skip-if-files-missing - name: Store coverage report as an artifact uses: actions/upload-artifact@v4 @@ -92,24 +94,25 @@ jobs: python-version: ["3.10"] steps: - uses: actions/checkout@v4 - - name: Setup Rye with caching of venvs - uses: eifinger/setup-rye@v4 - id: setup-rye + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: - enable-cache: true + version: "latest" + enable-cache: false # no need, uses the local uv cache. + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token github-token: ${{ secrets.GITHUB_TOKEN }} - cache-prefix: ${{ matrix.python-version }} + - name: Pin python-version ${{ matrix.python-version }} - run: rye pin ${{ matrix.python-version }} + run: uv python pin ${{ matrix.python-version }} - name: Install dependencies - run: rye sync --no-lock + run: uv sync --all-extras --frozen - name: Test with pytest - run: rye run pytest -v --cov=project --cov-report=xml --cov-append + run: uv run pytest -v --cov=project --cov-report=xml --cov-append - name: Test with pytest (only slow tests) - run: rye run pytest -v -m slow --slow --cov=project --cov-report=xml --cov-append + run: uv run pytest -v -m slow --slow --cov=project --cov-report=xml --cov-append - name: Store coverage report as an artifact uses: actions/upload-artifact@v4 @@ -159,11 +162,11 @@ jobs: - name: Set up the repo using the setup script run: scripts/mila_setup.sh - name: Install dependencies - run: rye sync --all-features --no-lock + run: uv sync --all-extras --frozen - name: Show installed packages - run: rye list + run: uv pip list - name: Test with pytest - run: rye run pytest -v --cov=project --cov-report=xml --cov-append + run: uv run pytest -v --cov=project --cov-report=xml --cov-append # TODO: Disabling full regression tests on the cluster for now, because the worker is often # interrupted and we want to avoid using the unkillable partition to not interrupt other's diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 200fa83f..11d5b3b8 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -11,20 +11,23 @@ jobs: steps: - name: Checkout uses: actions/checkout@v4 - - name: Setup Rye with caching of venvs - uses: eifinger/setup-rye@v4 - id: setup-rye + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: - enable-cache: true + version: "latest" + enable-cache: true # no need, uses the local uv cache. + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token github-token: ${{ secrets.GITHUB_TOKEN }} + cache-suffix: "3.10" + - name: Pin python-version - run: rye pin 3.10 + run: uv python pin 3.10 - name: Install dependencies - run: rye sync --no-lock --features docs + run: uv sync --extra docs --frozen - name: Deploy docs - run: rye run mkdocs gh-deploy --force + run: uv run mkdocs gh-deploy --force # note: Checking if we really need the one below: # uses: mhausenblas/mkdocs-deploy-gh-pages@1.9 # # Or use mhausenblas/mkdocs-deploy-gh-pages@nomaterial to build without the mkdocs-material theme diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2b4b01ca..f658459d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,6 +13,7 @@ repos: # - id: check-docstring-first - id: check-added-large-files require_serial: true + exclude: uv.lock - id: check-ast require_serial: true - id: check-yaml @@ -28,8 +29,6 @@ repos: require_serial: true - id: check-case-conflict require_serial: true - - id: check-added-large-files - require_serial: true - repo: https://github.com/charliermarsh/ruff-pre-commit # Ruff version. diff --git a/.regression_files/project/algorithms/hf_example_test/test_backward_pass_is_reproducible/cpu/albert_base_v2_hf_text_hf_example.yaml b/.regression_files/project/algorithms/hf_example_test/test_backward_pass_is_reproducible/cpu/albert_base_v2_hf_text_hf_example.yaml index 321cd499..f91a9de7 100644 --- a/.regression_files/project/algorithms/hf_example_test/test_backward_pass_is_reproducible/cpu/albert_base_v2_hf_text_hf_example.yaml +++ b/.regression_files/project/algorithms/hf_example_test/test_backward_pass_is_reproducible/cpu/albert_base_v2_hf_text_hf_example.yaml @@ -35,12 +35,12 @@ batch.token_type_ids: sum: 0 grads.network.albert.embeddings.LayerNorm.bias: device: cpu - max: '9.494e-03' - mean: '-1.081e-05' + max: '9.495e-03' + mean: '-1.080e-05' min: '-1.796e-02' shape: - 128 - sum: '-1.384e-03' + sum: '-1.383e-03' grads.network.albert.embeddings.LayerNorm.weight: device: cpu max: '1.186e-02' @@ -51,31 +51,31 @@ grads.network.albert.embeddings.LayerNorm.weight: sum: '-3.360e-02' grads.network.albert.embeddings.position_embeddings.weight: device: cpu - max: '6.971e-01' - mean: '-9.095e-12' + max: '6.970e-01' + mean: '-3.638e-12' min: '-1.086e+00' shape: - 512 - 128 - sum: '-5.960e-07' + sum: '-2.384e-07' grads.network.albert.embeddings.token_type_embeddings.weight: device: cpu max: '6.053e-01' - mean: '-4.657e-09' + mean: '-1.863e-09' min: '-1.119e+00' shape: - 2 - 128 - sum: '-1.192e-06' + sum: '-4.768e-07' grads.network.albert.embeddings.word_embeddings.weight: device: cpu max: '1.541e+00' - mean: '3.492e-14' - min: '-6.232e-01' + mean: '-2.008e-13' + min: '-6.233e-01' shape: - 30000 - 128 - sum: '1.341e-07' + sum: '-7.711e-07' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.LayerNorm.bias: device: cpu max: '6.357e-02' @@ -83,40 +83,40 @@ grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.Lay min: '-6.593e-02' shape: - 768 - sum: '-2.870e-01' + sum: '-2.871e-01' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.LayerNorm.weight: device: cpu max: '8.125e-02' mean: '1.121e-04' - min: '-5.810e-01' + min: '-5.811e-01' shape: - 768 - sum: '8.613e-02' + sum: '8.612e-02' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.dense.bias: device: cpu max: '6.013e-02' - mean: '1.940e-11' + mean: '-1.940e-11' min: '-5.395e-02' shape: - 768 - sum: '1.490e-08' + sum: '-1.490e-08' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.dense.weight: device: cpu max: '1.061e-01' - mean: '-2.324e-12' + mean: '4.042e-13' min: '-1.112e-01' shape: - 768 - 768 - sum: '-1.371e-06' + sum: '2.384e-07' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.key.bias: device: cpu - max: '7.916e-09' - mean: '-6.855e-12' - min: '-5.835e-09' + max: '1.275e-08' + mean: '-1.333e-11' + min: '-6.650e-09' shape: - 768 - sum: '-5.265e-09' + sum: '-1.023e-08' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.key.weight: device: cpu max: '6.536e-01' @@ -159,15 +159,15 @@ grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.attention.val shape: - 768 - 768 - sum: '-3.593e+00' + sum: '-3.592e+00' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.ffn.bias: device: cpu - max: '4.212e-02' + max: '4.213e-02' mean: '-3.888e-05' min: '-6.737e-02' shape: - 3072 - sum: '-1.194e-01' + sum: '-1.195e-01' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.ffn.weight: device: cpu max: '2.953e-01' @@ -180,20 +180,20 @@ grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.ffn.weight: grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.ffn_output.bias: device: cpu max: '5.003e-02' - mean: '8.731e-11' + mean: '-5.821e-11' min: '-5.843e-02' shape: - 768 - sum: '6.706e-08' + sum: '-4.470e-08' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.ffn_output.weight: device: cpu max: '6.105e-01' - mean: '-5.053e-12' + mean: '-2.627e-12' min: '-5.125e-01' shape: - 768 - 3072 - sum: '-1.192e-05' + sum: '-6.199e-06' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.full_layer_layer_norm.bias: device: cpu max: '6.435e-02' @@ -204,7 +204,7 @@ grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.full_layer_la sum: '-1.468e-01' grads.network.albert.encoder.albert_layer_groups.0.albert_layers.0.full_layer_layer_norm.weight: device: cpu - max: '5.072e-02' + max: '5.071e-02' mean: '-6.398e-04' min: '-4.395e-01' shape: @@ -214,7 +214,7 @@ grads.network.albert.encoder.embedding_hidden_mapping_in.bias: device: cpu max: '7.07e-03' mean: '-8.878e-05' - min: '-7.23e-03' + min: '-7.231e-03' shape: - 768 sum: '-6.818e-02' @@ -247,20 +247,20 @@ grads.network.albert.pooler.weight: grads.network.classifier.bias: device: cpu max: '2.129e-01' - mean: '0.e+00' + mean: '7.451e-09' min: '-2.129e-01' shape: - 2 - sum: '0.e+00' + sum: '1.490e-08' grads.network.classifier.weight: device: cpu max: '2.222e-01' - mean: '-4.657e-10' + mean: '-3.444e-10' min: '-2.222e-01' shape: - 2 - 768 - sum: '-7.153e-07' + sum: '-5.29e-07' outputs.labels: device: cpu max: 1 diff --git a/docs/install.md b/docs/install.md index e4df82b8..e23aa6c0 100644 --- a/docs/install.md +++ b/docs/install.md @@ -2,7 +2,7 @@ There are two ways to install this project -1. Using Conda (recommended for newcomers) +1. Using [uv](https://docs.astral.sh/uv/) 2. Using a development container (recommended if you are able to install Docker on your machine) ## Installation @@ -16,14 +16,15 @@ There are two ways to install this project 2. Installing dependencies - You can install the package using `pip install -e .`, although we recommend using the [Rye](https://rye.astral.sh/) + You can install the package using `pip install -e .`, but we recommend using [uv](https://docs.astral.sh/uv/) package manager. This makes it easier to switch python versions and to add or change the dependencies later on. 1. On your machine: ```console - curl -sSf https://rye.astral.sh/get | bash - rye sync # Creates a virtual environment and installs dependencies in it. + curl -LsSf https://astral.sh/uv/install.sh | sh + source ~/.cargo/env + uv sync # Creates a virtual environment and installs dependencies in it. ``` 2. On the Mila cluster: diff --git a/project/utils/auto_schema_test.py b/project/utils/auto_schema_test.py index 570d0298..beed9e78 100644 --- a/project/utils/auto_schema_test.py +++ b/project/utils/auto_schema_test.py @@ -68,6 +68,9 @@ def test_run_via_cli_without_errors(): main([".", "--stop-on-error"]) # assuming we're at the project root directory. +@pytest.mark.xfail( + reason="Rye isn't used anymore. TODO: Figure out the uv equivalent of rye scripts." +) def test_run_via_rye_script(): """Actually run the command on the repo, via the `[tool.rye.scripts]` entry in pyproject.toml.""" @@ -75,6 +78,9 @@ def test_run_via_rye_script(): subprocess.check_call(["rye", "run", "auto_schema"], text=True) +@pytest.mark.xfail( + reason="Rye isn't used anymore. TODO: Figure out the uv equivalent of rye scripts." +) def test_run_via_rye_script_without_errors(): """Actually run the command on the repo, via the `[tool.rye.scripts]` entry in pyproject.toml.""" diff --git a/pyproject.toml b/pyproject.toml index 272aa387..19ee2ce4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,6 +36,8 @@ dependencies = [ "rejax>=0.1.0", "xtils[jitpp] @ git+https://github.com/jessefarebro/xtils", "gymnasium[classic-control]>=0.29.1", + "mkdocs>=1.6.1", + "mkdocstrings[python]>=0.26.2", ] readme = "README.md" requires-python = ">= 3.10" @@ -46,13 +48,11 @@ custom_autoref_plugin = "project.utils.autoref_plugin:CustomAutoRefPlugin" [project.optional-dependencies] docs = [ - "mkdocstrings[python]>=0.25.2", "mkdocs-gen-files>=0.5.0", "mkdocs-awesome-pages-plugin>=2.9.3", "mkdocs-literate-nav>=0.6.1", "mkdocs-material>=9.5.31", "black>=24.8.0", - "mkdocs>=1.6.0", "mkdocs-video>=1.5.0", "mkdocs-section-index>=0.3.9", "mkdocs-macros-plugin>=1.0.5", @@ -103,35 +103,33 @@ indent-width = 4 lint.select = ["E4", "E7", "E9", "F", "I", "UP"] -[tool.rye] +[tool.hatch.metadata] +allow-direct-references = true + +[tool.hatch.build.targets.wheel] +packages = ["project"] + +[tool.uv] managed = true dev-dependencies = [ - "pytest>=8.3.2", - "pytest-timeout>=2.3.1", + "mktestdocs>=0.2.2", + "pre-commit>=3.8.0", + "pytest-benchmark>=4.0.0", + "pytest-cov>=5.0.0", + "pytest-env>=1.1.3", "pytest-regressions>=2.5.0", "pytest-skip-slow>=0.0.5", - "pytest-env>=1.1.3", + "pytest-testmon>=2.1.1", + "pytest-timeout>=2.3.1", "pytest-xdist>=3.6.1", + "pytest>=8.3.2", "ruff>=0.6.0", - "pytest-benchmark>=4.0.0", - "pytest-cov>=5.0.0", "tensor-regression>=0.0.8", - "pytest-testmon>=2.1.1", - "pre-commit>=3.8.0", - "mktestdocs>=0.2.2", - # TODO: weird. Don't understand why this one is required! - "tomli>=2.0.1", ] -[tool.hatch.metadata] -allow-direct-references = true - -[tool.hatch.build.targets.wheel] -packages = ["project"] - -[tool.rye.scripts] -serve-docs = "mkdocs serve" -check_torch_gpu = "python -c 'import torch; print(torch.cuda.is_available())'" -check_jax_gpu = "python -c 'import jax.numpy as jnp; print(jnp.zeros(1).devices())'" -tests = "pytest -x -v" -auto_schema = "python project/utils/auto_schema.py ." +# [tool.uv.tasks] +# serve-docs = "mkdocs serve" +# check_torch_gpu = "python -c 'import torch; print(torch.cuda.is_available())'" +# check_jax_gpu = "python -c 'import jax.numpy as jnp; print(jnp.zeros(1).devices())'" +# tests = "pytest -x -v" +# auto_schema = "python project/utils/auto_schema.py ." diff --git a/requirements-dev.lock b/requirements-dev.lock deleted file mode 100644 index a9b1c450..00000000 --- a/requirements-dev.lock +++ /dev/null @@ -1,787 +0,0 @@ -# generated by rye -# use `rye lock` or `rye sync` to update this lockfile -# -# last locked with the following flags: -# pre: false -# features: [] -# all-features: true -# with-sources: false -# generate-hashes: false -# universal: false - --e file:. -absl-py==2.1.0 - # via brax - # via chex - # via distrax - # via dm-env - # via ml-collections - # via mujoco - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via tensorflow-probability -aiohappyeyeballs==2.4.0 - # via aiohttp -aiohttp==3.10.5 - # via datasets - # via fsspec -aiosignal==1.3.1 - # via aiohttp -annotated-types==0.7.0 - # via pydantic -antlr4-python3-runtime==4.9.3 - # via hydra-core - # via omegaconf -appdirs==1.4.4 - # via orion -async-timeout==4.0.3 - # via aiohttp -attrs==24.2.0 - # via aiohttp -babel==2.16.0 - # via mkdocs-material -beautifulsoup4==4.12.3 - # via gdown -black==24.8.0 - # via research-project-template -blinker==1.8.2 - # via flask -bracex==2.5 - # via wcmatch -brax==0.10.5 - # via rejax -certifi==2024.8.30 - # via requests - # via sentry-sdk -cfgv==3.4.0 - # via pre-commit -charset-normalizer==3.3.2 - # via requests -chex==0.1.86 - # via distrax - # via evosax - # via gymnax - # via optax -click==8.1.7 - # via black - # via flask - # via mkdocs - # via mkdocstrings - # via wandb -cloudpickle==3.0.0 - # via gym - # via gymnasium - # via orion - # via submitit - # via tensorflow-probability -colorama==0.4.6 - # via griffe - # via mkdocs-material -colorlog==6.8.2 - # via hydra-colorlog -contextlib2==21.6.0 - # via ml-collections -contourpy==1.3.0 - # via matplotlib -coverage==7.6.1 - # via pytest-cov - # via pytest-testmon -cycler==0.12.1 - # via matplotlib -datasets==3.0.0 - # via evaluate - # via research-project-template -decorator==5.1.1 - # via tensorflow-probability -dill==0.3.8 - # via datasets - # via evaluate - # via multiprocess -distlib==0.3.8 - # via virtualenv -distrax==0.1.5 - # via rejax -dm-env==1.6 - # via brax -dm-tree==0.1.8 - # via dm-env - # via tensorflow-probability -dnspython==2.6.1 - # via pymongo -docker-pycreds==0.4.0 - # via wandb -docstring-parser==0.16 - # via simple-parsing -dotmap==1.3.30 - # via evosax -etils==1.9.4 - # via brax - # via mujoco - # via mujoco-mjx - # via optax - # via orbax-checkpoint -evaluate==0.4.3 - # via research-project-template -evosax==0.1.6 - # via rejax -exceptiongroup==1.2.2 - # via pytest -execnet==2.1.1 - # via pytest-xdist -falcon==3.1.3 - # via falcon-cors - # via orion -falcon-cors==1.1.7 - # via orion -farama-notifications==0.0.4 - # via gymnasium -filelock==3.16.1 - # via datasets - # via gdown - # via huggingface-hub - # via orion - # via torch - # via transformers - # via triton - # via virtualenv -flask==3.0.3 - # via brax - # via flask-cors -flask-cors==5.0.0 - # via brax -flax==0.8.5 - # via brax - # via evosax - # via gymnax - # via rejax - # via torch-jax-interop -fonttools==4.53.1 - # via matplotlib -frozenlist==1.4.1 - # via aiohttp - # via aiosignal -fsspec==2024.6.1 - # via datasets - # via etils - # via evaluate - # via huggingface-hub - # via lightning - # via pytorch-lightning - # via torch -gast==0.6.0 - # via tensorflow-probability -gdown==5.2.0 - # via research-project-template -ghp-import==2.1.0 - # via mkdocs -gitdb==4.0.11 - # via gitpython -gitpython==3.1.43 - # via orion - # via wandb -glfw==2.7.0 - # via mujoco -griffe==1.3.1 - # via mkdocstrings-python -grpcio==1.66.1 - # via brax -gunicorn==23.0.0 - # via orion -gym==0.26.2 - # via brax - # via gymnax -gym-notices==0.0.8 - # via gym -gymnasium==0.29.1 - # via gymnax - # via research-project-template -gymnax @ git+https://www.github.com/lebrice/gymnax@1d4a4b45cfa291de896cd7005fe624420dc6106c - # via rejax - # via research-project-template -huggingface-hub==0.25.0 - # via datasets - # via evaluate - # via tokenizers - # via transformers -humanize==4.10.0 - # via orbax-checkpoint -hydra-colorlog==1.2.0 - # via research-project-template -hydra-core==1.3.2 - # via hydra-colorlog - # via hydra-orion-sweeper - # via hydra-submitit-launcher - # via hydra-zen - # via research-project-template -hydra-orion-sweeper==1.6.4 - # via research-project-template -hydra-submitit-launcher==1.2.0 - # via research-project-template -hydra-zen==0.13.0 - # via research-project-template -identify==2.6.1 - # via pre-commit -idna==3.10 - # via requests - # via yarl -importlib-resources==6.4.5 - # via etils -iniconfig==2.0.0 - # via pytest -itsdangerous==2.2.0 - # via flask -jax==0.4.33 - # via brax - # via chex - # via distrax - # via evosax - # via flax - # via gymnax - # via jaxopt - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via pytorch2jax - # via research-project-template - # via torch-jax-interop - # via xtils -jax-cuda12-pjrt==0.4.33 - # via jax-cuda12-plugin -jax-cuda12-plugin==0.4.33 - # via jax -jaxlib==0.4.33 - # via brax - # via chex - # via distrax - # via evosax - # via gymnax - # via jax - # via jaxopt - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via pytorch2jax - # via research-project-template -jaxopt==0.8.3 - # via brax -jinja2==3.1.4 - # via brax - # via flask - # via mkdocs - # via mkdocs-macros-plugin - # via mkdocs-material - # via mkdocstrings - # via torch -joblib==1.4.2 - # via orion - # via scikit-learn - # via scikit-optimize -kaleido==0.2.1 - # via orion - # via research-project-template -kiwisolver==1.4.7 - # via matplotlib -lightning==2.4.0 - # via research-project-template -lightning-utilities==0.11.7 - # via lightning - # via pytorch-lightning - # via torchmetrics -lxml==5.3.0 - # via mkdocs-video -markdown==3.7 - # via mkdocs - # via mkdocs-autorefs - # via mkdocs-material - # via mkdocstrings - # via pymdown-extensions -markdown-it-py==3.0.0 - # via rich -markupsafe==2.1.5 - # via jinja2 - # via mkdocs - # via mkdocs-autorefs - # via mkdocstrings - # via werkzeug -matplotlib==3.9.2 - # via evosax - # via gymnax - # via research-project-template - # via seaborn -mdurl==0.1.2 - # via markdown-it-py -mergedeep==1.3.4 - # via mkdocs - # via mkdocs-get-deps -mkdocs==1.6.1 - # via mkdocs-autorefs - # via mkdocs-awesome-pages-plugin - # via mkdocs-gen-files - # via mkdocs-literate-nav - # via mkdocs-macros-plugin - # via mkdocs-material - # via mkdocs-section-index - # via mkdocs-video - # via mkdocstrings - # via research-project-template -mkdocs-autorefs==1.2.0 - # via mkdocstrings - # via mkdocstrings-python -mkdocs-awesome-pages-plugin==2.9.3 - # via research-project-template -mkdocs-gen-files==0.5.0 - # via research-project-template -mkdocs-get-deps==0.2.0 - # via mkdocs -mkdocs-literate-nav==0.6.1 - # via research-project-template -mkdocs-macros-plugin==1.2.0 - # via research-project-template -mkdocs-material==9.5.35 - # via research-project-template -mkdocs-material-extensions==1.3.1 - # via mkdocs-material -mkdocs-section-index==0.3.9 - # via research-project-template -mkdocs-video==1.5.0 - # via research-project-template -mkdocstrings==0.26.1 - # via mkdocstrings-python - # via research-project-template -mkdocstrings-python==1.11.1 - # via mkdocstrings -mktestdocs==0.2.2 -ml-collections==0.1.1 - # via brax -ml-dtypes==0.5.0 - # via jax - # via jaxlib - # via tensorstore -mpmath==1.3.0 - # via sympy -msgpack==1.1.0 - # via flax - # via orbax-checkpoint -mujoco==3.2.3 - # via brax - # via mujoco-mjx -mujoco-mjx==3.2.3 - # via brax -multidict==6.1.0 - # via aiohttp - # via yarl -multiprocess==0.70.16 - # via datasets - # via evaluate -mypy-extensions==1.0.0 - # via black -natsort==8.4.0 - # via mkdocs-awesome-pages-plugin -nest-asyncio==1.6.0 - # via orbax-checkpoint -networkx==3.3 - # via torch -nodeenv==1.9.1 - # via pre-commit -numpy==1.26.4 - # via brax - # via chex - # via contourpy - # via datasets - # via distrax - # via dm-env - # via evaluate - # via evosax - # via flax - # via gym - # via gymnasium - # via jax - # via jaxlib - # via jaxopt - # via matplotlib - # via ml-dtypes - # via mujoco - # via opt-einsum - # via optax - # via orbax-checkpoint - # via orion - # via pandas - # via pyarrow - # via rejax - # via scikit-learn - # via scikit-optimize - # via scipy - # via seaborn - # via tensor-regression - # via tensorboardx - # via tensorflow-probability - # via tensorstore - # via torchmetrics - # via torchvision - # via transformers - # via trimesh -nvidia-cublas-cu12==12.1.3.1 - # via jax-cuda12-plugin - # via nvidia-cudnn-cu12 - # via nvidia-cusolver-cu12 - # via research-project-template - # via torch -nvidia-cuda-cupti-cu12==12.1.105 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cuda-nvcc-cu12==12.6.68 - # via jax-cuda12-plugin - # via research-project-template -nvidia-cuda-nvrtc-cu12==12.1.105 - # via research-project-template - # via torch -nvidia-cuda-runtime-cu12==12.1.105 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cudnn-cu12==9.1.0.70 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cufft-cu12==11.0.2.54 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-curand-cu12==10.3.2.106 - # via research-project-template - # via torch -nvidia-cusolver-cu12==11.4.5.107 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cusparse-cu12==12.1.0.106 - # via jax-cuda12-plugin - # via nvidia-cusolver-cu12 - # via research-project-template - # via torch -nvidia-nccl-cu12==2.20.5 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-nvjitlink-cu12==12.6.68 - # via jax-cuda12-plugin - # via nvidia-cusolver-cu12 - # via nvidia-cusparse-cu12 - # via research-project-template -nvidia-nvtx-cu12==12.1.105 - # via research-project-template - # via torch -omegaconf==2.3.0 - # via hydra-core - # via hydra-orion-sweeper - # via hydra-zen -opt-einsum==3.3.0 - # via jax -optax==0.2.3 - # via brax - # via flax - # via rejax -orbax-checkpoint==0.6.4 - # via brax - # via flax -orion==0.2.7 - # via hydra-orion-sweeper -packaging==24.1 - # via black - # via datasets - # via evaluate - # via gunicorn - # via huggingface-hub - # via hydra-core - # via lightning - # via lightning-utilities - # via matplotlib - # via mkdocs - # via mkdocs-macros-plugin - # via plotly - # via pytest - # via pytorch-lightning - # via scikit-optimize - # via tensorboardx - # via torchmetrics - # via transformers -paginate==0.5.7 - # via mkdocs-material -pandas==2.2.2 - # via datasets - # via evaluate - # via orion - # via seaborn -pathspec==0.12.1 - # via black - # via mkdocs -pillow==10.4.0 - # via brax - # via matplotlib - # via torchvision -platformdirs==4.3.6 - # via black - # via mkdocs-get-deps - # via mkdocstrings - # via virtualenv - # via wandb -plotly==5.24.1 - # via orion -pluggy==1.5.0 - # via pytest -pre-commit==3.8.0 -protobuf==5.28.2 - # via orbax-checkpoint - # via tensorboardx - # via wandb -psutil==6.0.0 - # via orion - # via wandb -py-cpuinfo==9.0.0 - # via pytest-benchmark -pyaml==24.7.0 - # via scikit-optimize -pyarrow==17.0.0 - # via datasets -pydantic==2.9.2 - # via research-project-template -pydantic-core==2.23.4 - # via pydantic -pygame==2.6.0 - # via gymnasium -pygments==2.18.0 - # via mkdocs-material - # via rich -pymdown-extensions==10.9 - # via mkdocs-material - # via mkdocstrings -pymongo==4.9.1 - # via orion -pyopengl==3.1.7 - # via mujoco -pyparsing==3.1.4 - # via matplotlib -pysocks==1.7.1 - # via requests -pytest==8.3.3 - # via orion - # via pytest-benchmark - # via pytest-cov - # via pytest-datadir - # via pytest-env - # via pytest-regressions - # via pytest-skip-slow - # via pytest-testmon - # via pytest-timeout - # via pytest-xdist -pytest-benchmark==4.0.0 -pytest-cov==5.0.0 -pytest-datadir==1.5.0 - # via pytest-regressions -pytest-env==1.1.5 -pytest-regressions==2.5.0 - # via tensor-regression -pytest-skip-slow==0.0.5 -pytest-testmon==2.1.1 -pytest-timeout==2.3.1 -pytest-xdist==3.6.1 -python-dateutil==2.9.0.post0 - # via ghp-import - # via matplotlib - # via mkdocs-macros-plugin - # via pandas -pytinyrenderer==0.0.14 - # via brax -pytorch-lightning==2.4.0 - # via lightning -pytorch2jax==0.1.0 - # via torch-jax-interop -pytz==2024.2 - # via pandas -pyyaml==6.0.2 - # via datasets - # via evosax - # via flax - # via gymnax - # via huggingface-hub - # via lightning - # via mkdocs - # via mkdocs-get-deps - # via mkdocs-macros-plugin - # via ml-collections - # via omegaconf - # via orbax-checkpoint - # via orion - # via pre-commit - # via pyaml - # via pymdown-extensions - # via pytest-regressions - # via pytorch-lightning - # via pyyaml-env-tag - # via rejax - # via transformers - # via wandb -pyyaml-env-tag==0.1 - # via mkdocs -regex==2024.9.11 - # via mkdocs-material - # via transformers -rejax==0.1.0 - # via research-project-template -requests==2.32.3 - # via datasets - # via evaluate - # via gdown - # via huggingface-hub - # via mkdocs-material - # via orion - # via transformers - # via wandb -rich==13.8.1 - # via flax - # via research-project-template -ruff==0.6.5 -safetensors==0.4.5 - # via transformers -scikit-learn==1.5.2 - # via orion - # via research-project-template - # via scikit-optimize -scikit-optimize==0.10.2 - # via orion -scipy==1.14.1 - # via brax - # via jax - # via jaxlib - # via jaxopt - # via mujoco-mjx - # via orion - # via scikit-learn - # via scikit-optimize -seaborn==0.13.2 - # via gymnax -sentry-sdk==2.14.0 - # via wandb -setproctitle==1.3.3 - # via wandb -setuptools==75.1.0 - # via lightning-utilities - # via wandb -simple-parsing==0.1.6 - # via research-project-template -six==1.16.0 - # via docker-pycreds - # via ml-collections - # via python-dateutil - # via tensorflow-probability -smmap==5.0.1 - # via gitdb -soupsieve==2.6 - # via beautifulsoup4 -submitit==1.5.2 - # via hydra-submitit-launcher -sympy==1.13.3 - # via torch -tabulate==0.9.0 - # via orion -tenacity==9.0.0 - # via plotly -tensor-regression==0.0.8 -tensorboardx==2.6.2.2 - # via brax -tensorflow-probability==0.24.0 - # via distrax -tensorstore==0.1.65 - # via flax - # via orbax-checkpoint -termcolor==2.4.0 - # via mkdocs-macros-plugin -threadpoolctl==3.5.0 - # via scikit-learn -tokenizers==0.19.1 - # via transformers -tomli==2.0.1 - # via black - # via coverage - # via pytest - # via pytest-env -toolz==0.12.1 - # via chex -torch==2.4.1 - # via lightning - # via pytorch-lightning - # via pytorch2jax - # via research-project-template - # via tensor-regression - # via torch-jax-interop - # via torchmetrics - # via torchvision -torch-jax-interop==0.0.7 - # via research-project-template -torchmetrics==1.4.2 - # via lightning - # via pytorch-lightning -torchvision==0.19.1 - # via research-project-template -tqdm==4.66.5 - # via datasets - # via evaluate - # via gdown - # via huggingface-hub - # via lightning - # via pytorch-lightning - # via research-project-template - # via transformers -transformers==4.44.2 - # via research-project-template -trimesh==4.4.9 - # via brax - # via mujoco-mjx -triton==3.0.0 - # via torch -typing-extensions==4.12.2 - # via black - # via brax - # via chex - # via etils - # via flax - # via gymnasium - # via huggingface-hub - # via hydra-orion-sweeper - # via hydra-zen - # via lightning - # via lightning-utilities - # via multidict - # via orbax-checkpoint - # via pydantic - # via pydantic-core - # via pytorch-lightning - # via simple-parsing - # via submitit - # via torch -tzdata==2024.1 - # via pandas -urllib3==2.2.3 - # via requests - # via sentry-sdk -virtualenv==20.26.5 - # via pre-commit -wandb==0.18.1 - # via research-project-template -watchdog==5.0.2 - # via mkdocs -wcmatch==9.0 - # via mkdocs-awesome-pages-plugin -werkzeug==3.0.4 - # via flask -xtils @ git+https://github.com/jessefarebro/xtils@b20807d980b059c598a77ff2ef05075594f49f63 - # via research-project-template -xxhash==3.5.0 - # via datasets - # via evaluate -yarl==1.11.1 - # via aiohttp -zipp==3.20.2 - # via etils diff --git a/requirements.lock b/requirements.lock deleted file mode 100644 index 389cd098..00000000 --- a/requirements.lock +++ /dev/null @@ -1,738 +0,0 @@ -# generated by rye -# use `rye lock` or `rye sync` to update this lockfile -# -# last locked with the following flags: -# pre: false -# features: [] -# all-features: true -# with-sources: false -# generate-hashes: false -# universal: false - --e file:. -absl-py==2.1.0 - # via brax - # via chex - # via distrax - # via dm-env - # via ml-collections - # via mujoco - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via tensorflow-probability -aiohappyeyeballs==2.4.0 - # via aiohttp -aiohttp==3.10.5 - # via datasets - # via fsspec -aiosignal==1.3.1 - # via aiohttp -annotated-types==0.7.0 - # via pydantic -antlr4-python3-runtime==4.9.3 - # via hydra-core - # via omegaconf -appdirs==1.4.4 - # via orion -async-timeout==4.0.3 - # via aiohttp -attrs==24.2.0 - # via aiohttp -babel==2.16.0 - # via mkdocs-material -beautifulsoup4==4.12.3 - # via gdown -black==24.8.0 - # via research-project-template -blinker==1.8.2 - # via flask -bracex==2.5 - # via wcmatch -brax==0.10.5 - # via rejax -certifi==2024.8.30 - # via requests - # via sentry-sdk -charset-normalizer==3.3.2 - # via requests -chex==0.1.86 - # via distrax - # via evosax - # via gymnax - # via optax -click==8.1.7 - # via black - # via flask - # via mkdocs - # via mkdocstrings - # via wandb -cloudpickle==3.0.0 - # via gym - # via gymnasium - # via orion - # via submitit - # via tensorflow-probability -colorama==0.4.6 - # via griffe - # via mkdocs-material -colorlog==6.8.2 - # via hydra-colorlog -contextlib2==21.6.0 - # via ml-collections -contourpy==1.3.0 - # via matplotlib -cycler==0.12.1 - # via matplotlib -datasets==3.0.0 - # via evaluate - # via research-project-template -decorator==5.1.1 - # via tensorflow-probability -dill==0.3.8 - # via datasets - # via evaluate - # via multiprocess -distrax==0.1.5 - # via rejax -dm-env==1.6 - # via brax -dm-tree==0.1.8 - # via dm-env - # via tensorflow-probability -dnspython==2.6.1 - # via pymongo -docker-pycreds==0.4.0 - # via wandb -docstring-parser==0.16 - # via simple-parsing -dotmap==1.3.30 - # via evosax -etils==1.9.4 - # via brax - # via mujoco - # via mujoco-mjx - # via optax - # via orbax-checkpoint -evaluate==0.4.3 - # via research-project-template -evosax==0.1.6 - # via rejax -exceptiongroup==1.2.2 - # via pytest -falcon==3.1.3 - # via falcon-cors - # via orion -falcon-cors==1.1.7 - # via orion -farama-notifications==0.0.4 - # via gymnasium -filelock==3.16.1 - # via datasets - # via gdown - # via huggingface-hub - # via orion - # via torch - # via transformers - # via triton -flask==3.0.3 - # via brax - # via flask-cors -flask-cors==5.0.0 - # via brax -flax==0.8.5 - # via brax - # via evosax - # via gymnax - # via rejax - # via torch-jax-interop -fonttools==4.53.1 - # via matplotlib -frozenlist==1.4.1 - # via aiohttp - # via aiosignal -fsspec==2024.6.1 - # via datasets - # via etils - # via evaluate - # via huggingface-hub - # via lightning - # via pytorch-lightning - # via torch -gast==0.6.0 - # via tensorflow-probability -gdown==5.2.0 - # via research-project-template -ghp-import==2.1.0 - # via mkdocs -gitdb==4.0.11 - # via gitpython -gitpython==3.1.43 - # via orion - # via wandb -glfw==2.7.0 - # via mujoco -griffe==1.3.1 - # via mkdocstrings-python -grpcio==1.66.1 - # via brax -gunicorn==23.0.0 - # via orion -gym==0.26.2 - # via brax - # via gymnax -gym-notices==0.0.8 - # via gym -gymnasium==0.29.1 - # via gymnax - # via research-project-template -gymnax @ git+https://www.github.com/lebrice/gymnax@1d4a4b45cfa291de896cd7005fe624420dc6106c - # via rejax - # via research-project-template -huggingface-hub==0.25.0 - # via datasets - # via evaluate - # via tokenizers - # via transformers -humanize==4.10.0 - # via orbax-checkpoint -hydra-colorlog==1.2.0 - # via research-project-template -hydra-core==1.3.2 - # via hydra-colorlog - # via hydra-orion-sweeper - # via hydra-submitit-launcher - # via hydra-zen - # via research-project-template -hydra-orion-sweeper==1.6.4 - # via research-project-template -hydra-submitit-launcher==1.2.0 - # via research-project-template -hydra-zen==0.13.0 - # via research-project-template -idna==3.10 - # via requests - # via yarl -importlib-resources==6.4.5 - # via etils -iniconfig==2.0.0 - # via pytest -itsdangerous==2.2.0 - # via flask -jax==0.4.33 - # via brax - # via chex - # via distrax - # via evosax - # via flax - # via gymnax - # via jaxopt - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via pytorch2jax - # via research-project-template - # via torch-jax-interop - # via xtils -jax-cuda12-pjrt==0.4.33 - # via jax-cuda12-plugin -jax-cuda12-plugin==0.4.33 - # via jax -jaxlib==0.4.33 - # via brax - # via chex - # via distrax - # via evosax - # via gymnax - # via jax - # via jaxopt - # via mujoco-mjx - # via optax - # via orbax-checkpoint - # via pytorch2jax - # via research-project-template -jaxopt==0.8.3 - # via brax -jinja2==3.1.4 - # via brax - # via flask - # via mkdocs - # via mkdocs-macros-plugin - # via mkdocs-material - # via mkdocstrings - # via torch -joblib==1.4.2 - # via orion - # via scikit-learn - # via scikit-optimize -kaleido==0.2.1 - # via orion - # via research-project-template -kiwisolver==1.4.7 - # via matplotlib -lightning==2.4.0 - # via research-project-template -lightning-utilities==0.11.7 - # via lightning - # via pytorch-lightning - # via torchmetrics -lxml==5.3.0 - # via mkdocs-video -markdown==3.7 - # via mkdocs - # via mkdocs-autorefs - # via mkdocs-material - # via mkdocstrings - # via pymdown-extensions -markdown-it-py==3.0.0 - # via rich -markupsafe==2.1.5 - # via jinja2 - # via mkdocs - # via mkdocs-autorefs - # via mkdocstrings - # via werkzeug -matplotlib==3.9.2 - # via evosax - # via gymnax - # via research-project-template - # via seaborn -mdurl==0.1.2 - # via markdown-it-py -mergedeep==1.3.4 - # via mkdocs - # via mkdocs-get-deps -mkdocs==1.6.1 - # via mkdocs-autorefs - # via mkdocs-awesome-pages-plugin - # via mkdocs-gen-files - # via mkdocs-literate-nav - # via mkdocs-macros-plugin - # via mkdocs-material - # via mkdocs-section-index - # via mkdocs-video - # via mkdocstrings - # via research-project-template -mkdocs-autorefs==1.2.0 - # via mkdocstrings - # via mkdocstrings-python -mkdocs-awesome-pages-plugin==2.9.3 - # via research-project-template -mkdocs-gen-files==0.5.0 - # via research-project-template -mkdocs-get-deps==0.2.0 - # via mkdocs -mkdocs-literate-nav==0.6.1 - # via research-project-template -mkdocs-macros-plugin==1.2.0 - # via research-project-template -mkdocs-material==9.5.35 - # via research-project-template -mkdocs-material-extensions==1.3.1 - # via mkdocs-material -mkdocs-section-index==0.3.9 - # via research-project-template -mkdocs-video==1.5.0 - # via research-project-template -mkdocstrings==0.26.1 - # via mkdocstrings-python - # via research-project-template -mkdocstrings-python==1.11.1 - # via mkdocstrings -ml-collections==0.1.1 - # via brax -ml-dtypes==0.5.0 - # via jax - # via jaxlib - # via tensorstore -mpmath==1.3.0 - # via sympy -msgpack==1.1.0 - # via flax - # via orbax-checkpoint -mujoco==3.2.3 - # via brax - # via mujoco-mjx -mujoco-mjx==3.2.3 - # via brax -multidict==6.1.0 - # via aiohttp - # via yarl -multiprocess==0.70.16 - # via datasets - # via evaluate -mypy-extensions==1.0.0 - # via black -natsort==8.4.0 - # via mkdocs-awesome-pages-plugin -nest-asyncio==1.6.0 - # via orbax-checkpoint -networkx==3.3 - # via torch -numpy==2.1.1 - # via brax - # via chex - # via contourpy - # via datasets - # via distrax - # via dm-env - # via evaluate - # via evosax - # via flax - # via gym - # via gymnasium - # via jax - # via jaxlib - # via jaxopt - # via matplotlib - # via ml-dtypes - # via mujoco - # via opt-einsum - # via optax - # via orbax-checkpoint - # via orion - # via pandas - # via pyarrow - # via rejax - # via scikit-learn - # via scikit-optimize - # via scipy - # via seaborn - # via tensorboardx - # via tensorflow-probability - # via tensorstore - # via torchmetrics - # via torchvision - # via transformers - # via trimesh -nvidia-cublas-cu12==12.1.3.1 - # via jax-cuda12-plugin - # via nvidia-cudnn-cu12 - # via nvidia-cusolver-cu12 - # via research-project-template - # via torch -nvidia-cuda-cupti-cu12==12.1.105 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cuda-nvcc-cu12==12.6.68 - # via jax-cuda12-plugin - # via research-project-template -nvidia-cuda-nvrtc-cu12==12.1.105 - # via research-project-template - # via torch -nvidia-cuda-runtime-cu12==12.1.105 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cudnn-cu12==9.1.0.70 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cufft-cu12==11.0.2.54 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-curand-cu12==10.3.2.106 - # via research-project-template - # via torch -nvidia-cusolver-cu12==11.4.5.107 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-cusparse-cu12==12.1.0.106 - # via jax-cuda12-plugin - # via nvidia-cusolver-cu12 - # via research-project-template - # via torch -nvidia-nccl-cu12==2.20.5 - # via jax-cuda12-plugin - # via research-project-template - # via torch -nvidia-nvjitlink-cu12==12.6.68 - # via jax-cuda12-plugin - # via nvidia-cusolver-cu12 - # via nvidia-cusparse-cu12 - # via research-project-template -nvidia-nvtx-cu12==12.1.105 - # via research-project-template - # via torch -omegaconf==2.3.0 - # via hydra-core - # via hydra-orion-sweeper - # via hydra-zen -opt-einsum==3.3.0 - # via jax -optax==0.2.3 - # via brax - # via flax - # via rejax -orbax-checkpoint==0.6.4 - # via brax - # via flax -orion==0.2.7 - # via hydra-orion-sweeper -packaging==24.1 - # via black - # via datasets - # via evaluate - # via gunicorn - # via huggingface-hub - # via hydra-core - # via lightning - # via lightning-utilities - # via matplotlib - # via mkdocs - # via mkdocs-macros-plugin - # via plotly - # via pytest - # via pytorch-lightning - # via scikit-optimize - # via tensorboardx - # via torchmetrics - # via transformers -paginate==0.5.7 - # via mkdocs-material -pandas==2.2.2 - # via datasets - # via evaluate - # via orion - # via seaborn -pathspec==0.12.1 - # via black - # via mkdocs -pillow==10.4.0 - # via brax - # via matplotlib - # via torchvision -platformdirs==4.3.6 - # via black - # via mkdocs-get-deps - # via mkdocstrings - # via wandb -plotly==5.24.1 - # via orion -pluggy==1.5.0 - # via pytest -protobuf==5.28.2 - # via orbax-checkpoint - # via tensorboardx - # via wandb -psutil==6.0.0 - # via orion - # via wandb -pyaml==24.7.0 - # via scikit-optimize -pyarrow==17.0.0 - # via datasets -pydantic==2.9.2 - # via research-project-template -pydantic-core==2.23.4 - # via pydantic -pygame==2.6.0 - # via gymnasium -pygments==2.18.0 - # via mkdocs-material - # via rich -pymdown-extensions==10.9 - # via mkdocs-material - # via mkdocstrings -pymongo==4.9.1 - # via orion -pyopengl==3.1.7 - # via mujoco -pyparsing==3.1.4 - # via matplotlib -pysocks==1.7.1 - # via requests -pytest==8.3.3 - # via orion -python-dateutil==2.9.0.post0 - # via ghp-import - # via matplotlib - # via mkdocs-macros-plugin - # via pandas -pytinyrenderer==0.0.14 - # via brax -pytorch-lightning==2.4.0 - # via lightning -pytorch2jax==0.1.0 - # via torch-jax-interop -pytz==2024.2 - # via pandas -pyyaml==6.0.2 - # via datasets - # via evosax - # via flax - # via gymnax - # via huggingface-hub - # via lightning - # via mkdocs - # via mkdocs-get-deps - # via mkdocs-macros-plugin - # via ml-collections - # via omegaconf - # via orbax-checkpoint - # via orion - # via pyaml - # via pymdown-extensions - # via pytorch-lightning - # via pyyaml-env-tag - # via rejax - # via transformers - # via wandb -pyyaml-env-tag==0.1 - # via mkdocs -regex==2024.9.11 - # via mkdocs-material - # via transformers -rejax==0.1.0 - # via research-project-template -requests==2.32.3 - # via datasets - # via evaluate - # via gdown - # via huggingface-hub - # via mkdocs-material - # via orion - # via transformers - # via wandb -rich==13.8.1 - # via flax - # via research-project-template -safetensors==0.4.5 - # via transformers -scikit-learn==1.5.2 - # via orion - # via research-project-template - # via scikit-optimize -scikit-optimize==0.10.2 - # via orion -scipy==1.14.1 - # via brax - # via jax - # via jaxlib - # via jaxopt - # via mujoco-mjx - # via orion - # via scikit-learn - # via scikit-optimize -seaborn==0.13.2 - # via gymnax -sentry-sdk==2.14.0 - # via wandb -setproctitle==1.3.3 - # via wandb -setuptools==75.1.0 - # via lightning-utilities - # via wandb -simple-parsing==0.1.6 - # via research-project-template -six==1.16.0 - # via docker-pycreds - # via ml-collections - # via python-dateutil - # via tensorflow-probability -smmap==5.0.1 - # via gitdb -soupsieve==2.6 - # via beautifulsoup4 -submitit==1.5.2 - # via hydra-submitit-launcher -sympy==1.13.3 - # via torch -tabulate==0.9.0 - # via orion -tenacity==9.0.0 - # via plotly -tensorboardx==2.6.2.2 - # via brax -tensorflow-probability==0.24.0 - # via distrax -tensorstore==0.1.65 - # via flax - # via orbax-checkpoint -termcolor==2.4.0 - # via mkdocs-macros-plugin -threadpoolctl==3.5.0 - # via scikit-learn -tokenizers==0.19.1 - # via transformers -tomli==2.0.1 - # via black - # via pytest -toolz==0.12.1 - # via chex -torch==2.4.1 - # via lightning - # via pytorch-lightning - # via pytorch2jax - # via research-project-template - # via torch-jax-interop - # via torchmetrics - # via torchvision -torch-jax-interop==0.0.7 - # via research-project-template -torchmetrics==1.4.2 - # via lightning - # via pytorch-lightning -torchvision==0.19.1 - # via research-project-template -tqdm==4.66.5 - # via datasets - # via evaluate - # via gdown - # via huggingface-hub - # via lightning - # via pytorch-lightning - # via research-project-template - # via transformers -transformers==4.44.2 - # via research-project-template -trimesh==4.4.9 - # via brax - # via mujoco-mjx -triton==3.0.0 - # via torch -typing-extensions==4.12.2 - # via black - # via brax - # via chex - # via etils - # via flax - # via gymnasium - # via huggingface-hub - # via hydra-orion-sweeper - # via hydra-zen - # via lightning - # via lightning-utilities - # via multidict - # via orbax-checkpoint - # via pydantic - # via pydantic-core - # via pytorch-lightning - # via simple-parsing - # via submitit - # via torch -tzdata==2024.1 - # via pandas -urllib3==2.2.3 - # via requests - # via sentry-sdk -wandb==0.18.1 - # via research-project-template -watchdog==5.0.2 - # via mkdocs -wcmatch==9.0 - # via mkdocs-awesome-pages-plugin -werkzeug==3.0.4 - # via flask -xtils @ git+https://github.com/jessefarebro/xtils@b20807d980b059c598a77ff2ef05075594f49f63 - # via research-project-template -xxhash==3.5.0 - # via datasets - # via evaluate -yarl==1.11.1 - # via aiohttp -zipp==3.20.2 - # via etils diff --git a/scripts/mila_setup.sh b/scripts/mila_setup.sh index 5e0ced57..17691c15 100755 --- a/scripts/mila_setup.sh +++ b/scripts/mila_setup.sh @@ -8,26 +8,23 @@ module --quiet purge SLURM_TMPDIR=${SLURM_TMPDIR:-/tmp} -if ! [ -x "$(command -v rye)" ]; then - echo "Installing Rye (a Python package manager, see https://rye.astral.sh/)" - # Note: same as this line, but without the need to re-launch the shell: - # curl -sSf https://rye.astral.sh/get | bash - wget https://rye.astral.sh/get --output-document $SLURM_TMPDIR/install.sh - source $SLURM_TMPDIR/install.sh - source "$HOME/.rye/env" +if ! [ -x "$(command -v uv)" ]; then + echo "Installing UV (a Python package manager, see https://docs.astral.sh/uv/)" + curl -LsSf https://astral.sh/uv/install.sh | sh + source "$HOME/.cargo/env" else - echo "✅ Rye is already installed" + echo "✅ UV is already installed" fi # BUG: Seems like the installation script adds something to ~/.profile, but this file isn't being # run, even when there isn't a ~/.user_profile or ~/.bash_profile file? # Therefore I'm adding a line in ~/.bash_aliases instead. -if ! grep -q 'source "$HOME/.rye/env"' ~/.bash_aliases; then - echo "Adding a line with 'source \"\$HOME/.rye/env\"' to ~/.bash_aliases" - echo "# Adding the rye command to path (https://rye.astral.sh/)" >> ~/.bash_aliases - echo 'source "$HOME/.rye/env"' >> ~/.bash_aliases +if ! grep -q 'source "$HOME/.cargo/env"' ~/.bash_aliases; then + echo "Adding a line with 'source \"\$HOME/.cargo/env\"' to ~/.bash_aliases" + echo "# Adding the uv command to path (https://docs.astral.sh/uv/)" >> ~/.bash_aliases + echo 'source "$HOME/.cargo/env"' >> ~/.bash_aliases else - echo "✅ ~/.bash_aliases already contains 'source \"\$HOME/.rye/env\"'" + echo "✅ ~/.bash_aliases already contains 'source \"\$HOME/.cargo/env\"'" fi if ! grep -q 'module load libffi OpenSSL' ~/.bash_aliases; then @@ -41,7 +38,7 @@ fi if ! grep -q 'export UV_LINK_MODE=${UV_LINK_MODE:-"symlink"}' ~/.bash_aliases; then echo "Adding a line with 'export UV_LINK_MODE=\${UV_LINK_MODE:-"symlink"}' to ~/.bash_aliases" - echo '# Setting UV_LINK_MODE to symlink (so that rye can use a cache dir on $SCRATCH)' >> ~/.bash_aliases + echo '# Setting UV_LINK_MODE to symlink (so that uv can use a cache dir on $SCRATCH)' >> ~/.bash_aliases echo 'export UV_LINK_MODE=${UV_LINK_MODE:-"symlink"}' >> ~/.bash_aliases else echo "✅ ~/.bash_aliases already contains 'export UV_LINK_MODE="symlink"'" @@ -71,7 +68,7 @@ fi # install all dependencies echo "Installing all dependencies" -rye sync --all-features +uv sync --all-extras --frozen echo "🙌 All done! 🙌" echo "🤖 Next, reload the vscode window (Ctrl+shift+P, then write 'reload window' and press Enter)" diff --git a/uv.lock b/uv.lock new file mode 100644 index 00000000..a8ef8e91 --- /dev/null +++ b/uv.lock @@ -0,0 +1,4664 @@ +version = 1 +requires-python = ">=3.10" +resolution-markers = [ + "python_full_version < '3.11' and sys_platform != 'linux'", + "python_full_version == '3.11.*' and sys_platform != 'linux'", + "python_full_version < '3.11' and sys_platform == 'linux'", + "python_full_version == '3.11.*' and sys_platform == 'linux'", + "python_full_version == '3.12.*' and sys_platform != 'linux'", + "python_full_version == '3.12.*' and sys_platform == 'linux'", + "python_full_version >= '3.13' and sys_platform != 'linux'", + "python_full_version >= '3.13' and sys_platform == 'linux'", +] + +[[package]] +name = "absl-py" +version = "2.1.0" +source = { registry = "https://pypi.org/simple" } +sdist = { url = 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