From 28f4b83d93a87d8ccc84c53bda3042938cf9e0ae Mon Sep 17 00:00:00 2001 From: marinkaz Date: Sun, 5 Jan 2025 21:35:22 -0500 Subject: [PATCH] Update papers, posts, positions --- .../01/special-issue-deep-learning/index.html | 6 +- 2019/12/01/welcome-to-new-students/index.html | 6 +- 2019/12/20/new-paper-ICLR/index.html | 6 +- 2020/02/01/new-preprint-MARS/index.html | 6 +- 2020/03/01/welcome-to-new-students/index.html | 6 +- 2020/03/02/IJCAI-tutorial/index.html | 6 +- 2020/03/02/graphl-ml-workshop/index.html | 6 +- 2020/03/25/covid-19-task-force/index.html | 6 +- 2020/03/26/aicures-participation/index.html | 6 +- .../04/15/network-medicine-covid19/index.html | 6 +- 2020/04/27/ecmlpkdd-phd-forum/index.html | 6 +- 2020/05/01/new-preprint-skipgnn/index.html | 6 +- .../index.html | 6 +- 2020/05/04/special-issue-covid19/index.html | 6 +- 2020/05/06/new-preprint-ogb/index.html | 6 +- 2020/06/15/new-preprint-gmeta/index.html | 6 +- 2020/06/17/new-preprint-gnnguard/index.html | 6 +- 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Zitnik"},"dateModified":"2020-05-04T00:00:00-04:00","datePublished":"2020-05-04T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Special Issue on AI for COVID-19","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/05/04/special-issue-covid19/"},"url":"https://zitniklab.hms.harvard.edu/2020/05/04/special-issue-covid19/"} - + The Open Graph Benchmark | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-05-06T00:00:00-04:00","datePublished":"2020-05-06T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"The Open Graph 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Zitnik"},"dateModified":"2020-06-17T00:00:00-04:00","datePublished":"2020-06-17T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Defense Against Adversarial Attacks","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/06/17/new-preprint-gnnguard/"},"url":"https://zitniklab.hms.harvard.edu/2020/06/17/new-preprint-gnnguard/"} - + Subgraph Neural Networks | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-06-18T00:00:00-04:00","datePublished":"2020-06-18T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Subgraph Neural Networks","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/06/18/new-preprint-subgnn/"},"url":"https://zitniklab.hms.harvard.edu/2020/06/18/new-preprint-subgnn/"} - + DeepPurpose Library | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-07-01T00:00:00-04:00","datePublished":"2020-07-01T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"DeepPurpose Library","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/07/01/new-preprint-deeppurpose/"},"url":"https://zitniklab.hms.harvard.edu/2020/07/01/new-preprint-deeppurpose/"} - + Postdoctoral Research Fellowship | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-07-27T00:00:00-04:00","datePublished":"2020-07-27T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Postdoctoral Research Fellowship","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/07/27/postdoc-job-ad/"},"url":"https://zitniklab.hms.harvard.edu/2020/07/27/postdoc-job-ad/"} - + Podcast on ML for Drug Development | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-07-29T00:00:00-04:00","datePublished":"2020-07-29T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Podcast on ML for Drug Development","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/07/29/podcat-bioinformatics-chat/"},"url":"https://zitniklab.hms.harvard.edu/2020/07/29/podcat-bioinformatics-chat/"} - + Network Drugs for COVID-19 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-08-12T00:00:00-04:00","datePublished":"2020-08-12T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Network Drugs for COVID-19","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/08/12/covid19-networkdrugs/"},"url":"https://zitniklab.hms.harvard.edu/2020/08/12/covid19-networkdrugs/"} - + Trustworthy AI for Healthcare | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-08-24T00:00:00-04:00","datePublished":"2020-08-24T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Trustworthy AI for Healthcare","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/08/24/aaai-workshop/"},"url":"https://zitniklab.hms.harvard.edu/2020/08/24/aaai-workshop/"} - + MITxHarvard Women in AI Interview | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-09-09T00:00:00-04:00","datePublished":"2020-09-09T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"MITxHarvard Women in AI Interview","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/09/09/mitxharvard-women-ai-copy/"},"url":"https://zitniklab.hms.harvard.edu/2020/09/09/mitxharvard-women-ai-copy/"} - + Four Papers Accepted at NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-09-25T00:00:00-04:00","datePublished":"2020-09-25T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Four Papers Accepted at NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/09/25/neurips-acceptance/"},"url":"https://zitniklab.hms.harvard.edu/2020/09/25/neurips-acceptance/"} - + MARS: Novel Cell Types in Single-cell Datasets | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-10-19T00:00:00-04:00","datePublished":"2020-10-19T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"MARS: Novel Cell Types in Single-cell Datasets","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/10/19/new-paper-MARS/"},"url":"https://zitniklab.hms.harvard.edu/2020/10/19/new-paper-MARS/"} - + National Symposium on the Future of Drugs | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-11-01T00:00:00-04:00","datePublished":"2020-11-01T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"National Symposium on the Future of Drugs","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/11/01/futuretx20-symposium/"},"url":"https://zitniklab.hms.harvard.edu/2020/11/01/futuretx20-symposium/"} - + Therapeutics Data Commons (TDC) | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-11-17T00:00:00-05:00","datePublished":"2020-11-17T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Therapeutics Data Commons (TDC)","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/11/17/TDC/"},"url":"https://zitniklab.hms.harvard.edu/2020/11/17/TDC/"} - + Bayer Early Excellence in Science Award | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-12-07T00:00:00-05:00","datePublished":"2020-12-07T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Bayer Early Excellence in Science Award","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/12/07/Early-Excellence-in-Science-Award/"},"url":"https://zitniklab.hms.harvard.edu/2020/12/07/Early-Excellence-in-Science-Award/"} - + Two New Papers Published | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2020-12-09T00:00:00-05:00","datePublished":"2020-12-09T00:00:00-05:00","description":"We are excited to see published our paper on DeepPurpose, a deep learning library for drug-target interaction prediction, and our paper on skipGNN, a graph neural network for predicting molecular interactions.","headline":"Two New Papers Published","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2020/12/09/DeepPurpose-skipGNN-papers-published/"},"url":"https://zitniklab.hms.harvard.edu/2020/12/09/DeepPurpose-skipGNN-papers-published/"} - + Tutorial on ML for Drug Development | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-01-01T00:00:00-05:00","datePublished":"2021-01-01T00:00:00-05:00","description":"We will present a tutorial on ML/AI for drug discovery and development at IJCAI conference. See the tutorial website.","headline":"Tutorial on ML for Drug Development","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/01/01/IJCAI-tutorial/"},"url":"https://zitniklab.hms.harvard.edu/2021/01/01/IJCAI-tutorial/"} - + Workshop on AI in Health at the Web Conference | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-01-13T00:00:00-05:00","datePublished":"2021-01-13T00:00:00-05:00","description":"We are excited to co-organize Workshop on AI in Health: Transferring and Integrating Knowledge for Better Health at the Web (WWW) conference. The call for papers is open! We also announce the AI in Health Data Challenge.","headline":"Workshop on AI in Health at the Web Conference","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/01/13/WWW-workshop/"},"url":"https://zitniklab.hms.harvard.edu/2021/01/13/WWW-workshop/"} - + An Algorithmic Approach to Patient Safety | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-01-20T00:00:00-05:00","datePublished":"2021-01-20T00:00:00-05:00","description":"The new algorithmic approach investigates population-scale patient safety data and reveals inequalities in adverse events before and during COVID-19 pandemic.","headline":"An Algorithmic Approach to Patient Safety","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/01/20/new-preprint-patient-safety/"},"url":"https://zitniklab.hms.harvard.edu/2021/01/20/new-preprint-patient-safety/"} - + New Preprint on Therapeutics Data Commons | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-02-18T00:00:00-05:00","datePublished":"2021-02-18T00:00:00-05:00","description":"We are excited to share the preprint on Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics. TDC is available at http://tdcommons.ai.","headline":"New Preprint on Therapeutics Data Commons","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/02/18/new-preprint-TDC/"},"url":"https://zitniklab.hms.harvard.edu/2021/02/18/new-preprint-TDC/"} - + Fair and Stable Graph Representation Learning | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-03-01T00:00:00-05:00","datePublished":"2021-03-01T00:00:00-05:00","description":"We are thrilled to share the latest preprint on fair and stable graph representation learning.","headline":"Fair and Stable Graph Representation Learning","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/03/01/new-preprint-Nifty/"},"url":"https://zitniklab.hms.harvard.edu/2021/03/01/new-preprint-Nifty/"} - + Graph Networks in Computational Biology | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-03-11T00:00:00-05:00","datePublished":"2021-03-11T00:00:00-05:00","description":"We are excited to share slides from our recent lecture on Graph Neural Networks in Computational Biology, which we gave at Stanford ML for Graphs course.","headline":"Graph Networks in Computational Biology","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/03/11/cs224w-lecture/"},"url":"https://zitniklab.hms.harvard.edu/2021/03/11/cs224w-lecture/"} - + Hot Off the Press: Multiscale Interactome | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-03-11T00:00:00-05:00","datePublished":"2021-03-11T00:00:00-05:00","description":"Hot off the press! We develop a multiscale interactome approach to explain disease treatments. The approach can predict drug-disease treatments, identify proteins and biological functions related to treatment, and identify genes that alter treatment’s efficacy and adverse reactions.","headline":"Hot Off the Press: Multiscale Interactome","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/03/11/multiscale-interactome-published/"},"url":"https://zitniklab.hms.harvard.edu/2021/03/11/multiscale-interactome-published/"} - + Michelle’s Graduate Research Fellowship | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-03-24T00:00:00-04:00","datePublished":"2021-03-24T00:00:00-04:00","description":"Michelle M. Li won the NSF Graduate Research Fellowship Award. Congratulations!","headline":"Michelle’s Graduate Research Fellowship","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/03/24/NSF-GRFP/"},"url":"https://zitniklab.hms.harvard.edu/2021/03/24/NSF-GRFP/"} - + Receiving Amazon Research Award | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-03-25T00:00:00-04:00","datePublished":"2021-03-25T00:00:00-04:00","description":"We are excited about receiving Amazon Faculty Research Award on Actionable Graph Learning for Finding Cures for Emerging Diseases. Thank you to Amazon Science for supporting our research.","headline":"Receiving Amazon Research Award","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/03/25/Amazon-ARA/"},"url":"https://zitniklab.hms.harvard.edu/2021/03/25/Amazon-ARA/"} - + Representation Learning for Biomedical Nets | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-04-12T00:00:00-04:00","datePublished":"2021-04-12T00:00:00-04:00","description":"In our survey on representation learning for biomedical networks we discuss how long-standing principles of network biology and medicine provide the conceptual grounding for representation learning, explain its successes, and inform future advances.","headline":"Representation Learning for Biomedical Nets","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/04/12/RepLearningReview/"},"url":"https://zitniklab.hms.harvard.edu/2021/04/12/RepLearningReview/"} - + Hot Off the Press: COVID-19 Repurposing in PNAS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-04-27T00:00:00-04:00","datePublished":"2021-04-27T00:00:00-04:00","description":"Hot off the press in PNAS! We deployed AI/ML and network medicine algorithms to rank 6,340 drugs for their expected efficacy against SARS-CoV-2. We screened in human cells the top-ranked drugs, identifying six drugs that reduced viral infection, four of which could be repurposed to treat COVID-19.","headline":"Hot Off the Press: COVID-19 Repurposing in PNAS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/04/27/covid19-repurposing-published/"},"url":"https://zitniklab.hms.harvard.edu/2021/04/27/covid19-repurposing-published/"} - + New Paper Accepted at UAI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-05-15T00:00:00-04:00","datePublished":"2021-05-15T00:00:00-04:00","description":"Our unified framework for fair and stable graph representation learning has just been accepted at UAI. We establish a theoretical connection between counterfactual fairness and stability and use it in a framework that can be used with any GNN to learn fair and stable embeddings.","headline":"New Paper Accepted at UAI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/05/15/nifty-UAI/"},"url":"https://zitniklab.hms.harvard.edu/2021/05/15/nifty-UAI/"} - + Deep Contextual Learners for Protein Networks | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-06-05T00:00:00-04:00","datePublished":"2021-06-05T00:00:00-04:00","description":"New preprint on contextualized protein embeddings aims to characterize genes with disease-specific interactions and elucidate disease manifestation in specific cell types.","headline":"Deep Contextual Learners for Protein Networks","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/06/05/nifty-AWARE/"},"url":"https://zitniklab.hms.harvard.edu/2021/06/05/nifty-AWARE/"} - + Theory and Evaluation for Explanations | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-06-18T00:00:00-04:00","datePublished":"2021-06-18T00:00:00-04:00","description":"We introduce the first axiomatic framework for theoretically analyzing, evaluating, and comparing GNN explanation methods. We formalize key properties that all methods should satisfy to generate reliable explanations: faithfulness, stability, and fairness.","headline":"Theory and Evaluation for Explanations","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/06/18/exGNN-preprint/"},"url":"https://zitniklab.hms.harvard.edu/2021/06/18/exGNN-preprint/"} - + Five presentations at ICML 2021 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-07-20T00:00:00-04:00","datePublished":"2021-07-20T00:00:00-04:00","description":"We are excited to be at ICML 2021 where we will present 1 paper at Workshop on Socially Responsible Machine Learning, 1 paper at Workshop on Theoretic Foundation, Criticism, and Application Trend of Explainable AI, 2 papers at Workshop on Interpretable Machine Learning in Healthcare, and 1 paper at Workshop on Computational Biology. Congratulations to fantastic students!","headline":"Five presentations at ICML 2021","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/07/20/ICML-papers/"},"url":"https://zitniklab.hms.harvard.edu/2021/07/20/ICML-papers/"} - + Best Paper Award at ICML Interpretable ML | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-07-24T00:00:00-04:00","datePublished":"2021-07-24T00:00:00-04:00","description":"Our short paper on Interactive Visual Explanations for Deep Drug Repurposing received the Best Paper Award at the ICML Interpretable ML in Healthcare Workshop. Stay tuned for more news on this evolving project.","headline":"Best Paper Award at ICML Interpretable ML","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/07/24/IMLH-best-paper/"},"url":"https://zitniklab.hms.harvard.edu/2021/07/24/IMLH-best-paper/"} - + Best Poster Award at ICML Comp Biology | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-08-02T00:00:00-04:00","datePublished":"2021-08-02T00:00:00-04:00","description":"Congratulations to Michelle for winning the Best Poster Award for her work on deep contextual learners for protein networks at the ICML Workshop on Computational Biology.","headline":"Best Poster Award at ICML Comp Biology","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/08/02/WCB-best-poster/"},"url":"https://zitniklab.hms.harvard.edu/2021/08/02/WCB-best-poster/"} - + AI for Science at NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-08-03T00:00:00-04:00","datePublished":"2021-08-03T00:00:00-04:00","description":"We are organizing the AI for Science workshop at NeurIPS 2021 and have a stellar lineup of invited speakers.","headline":"AI for Science at NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/08/03/NeurIPS-AI-Science/"},"url":"https://zitniklab.hms.harvard.edu/2021/08/03/NeurIPS-AI-Science/"} - + New Paper on Therapeutics Data Commons | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-08-08T00:00:00-04:00","datePublished":"2021-08-08T00:00:00-04:00","description":"Our latest paper on Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development will appear at NeurIPS. We are excited to contribute novel datasets and benchmarks in the broad area of therapeutics.","headline":"New Paper on Therapeutics Data Commons","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/08/08/NeurIPS-TDC/"},"url":"https://zitniklab.hms.harvard.edu/2021/08/08/NeurIPS-TDC/"} - + Trustworthy AI for Healthcare at AAAI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-08-30T00:00:00-04:00","datePublished":"2021-08-30T00:00:00-04:00","description":"We will be organizing a meeting on Trustworthy AI for Healthcare at AAAI 2022. Stay tuned for details and call for papers.","headline":"Trustworthy AI for Healthcare at AAAI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/08/30/AAAIWorkshop/"},"url":"https://zitniklab.hms.harvard.edu/2021/08/30/AAAIWorkshop/"} - + Leveraging Cell Ontology to Classify Cell Types | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-09-04T00:00:00-04:00","datePublished":"2021-09-04T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Leveraging Cell Ontology to Classify Cell Types","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/09/04/OnClassNatCommun/"},"url":"https://zitniklab.hms.harvard.edu/2021/09/04/OnClassNatCommun/"} - + Major New Release of TDC | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-09-04T00:00:00-04:00","datePublished":"2021-09-04T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Major New Release of TDC","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/09/04/TDCMajorRelease/"},"url":"https://zitniklab.hms.harvard.edu/2021/09/04/TDCMajorRelease/"} - + Massive Analysis of Differential Adverse Events | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-10-06T00:00:00-04:00","datePublished":"2021-10-06T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Massive Analysis of Differential Adverse Events","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/10/06/DiffAENatComputScience/"},"url":"https://zitniklab.hms.harvard.edu/2021/10/06/DiffAENatComputScience/"} - + Graph-Guided Networks for Time Series | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-10-11T00:00:00-04:00","datePublished":"2021-10-11T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Graph-Guided Networks for Time Series","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/10/11/RaindropPreprint/"},"url":"https://zitniklab.hms.harvard.edu/2021/10/11/RaindropPreprint/"} - + Adverse Drug Effects During the Pandemic | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-10-18T00:00:00-04:00","datePublished":"2021-10-18T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Adverse Drug Effects During the Pandemic","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/10/18/HMSNews/"},"url":"https://zitniklab.hms.harvard.edu/2021/10/18/HMSNews/"} - + Co-Evolution for Functional Interactions | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-11-09T00:00:00-05:00","datePublished":"2021-11-09T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Co-Evolution for Functional Interactions","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/11/09/PhylogeneticProfilingCollab/"},"url":"https://zitniklab.hms.harvard.edu/2021/11/09/PhylogeneticProfilingCollab/"} - + Submit to Our AAAI 2022 Workshop | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-11-11T00:00:00-05:00","datePublished":"2021-11-11T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Submit to Our AAAI 2022 Workshop","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/11/11/TrustworthyAIWorkshop/"},"url":"https://zitniklab.hms.harvard.edu/2021/11/11/TrustworthyAIWorkshop/"} - + Attend Our AI4Science Workshop at NeurIPS 2021 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-12-13T00:00:00-05:00","datePublished":"2021-12-13T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Attend Our AI4Science Workshop at NeurIPS 2021","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/12/13/NeurIPSAI4Science/"},"url":"https://zitniklab.hms.harvard.edu/2021/12/13/NeurIPSAI4Science/"} - + Beyond Low Earth Orbit: Biological Research & AI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-12-23T00:00:00-05:00","datePublished":"2021-12-23T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Beyond Low Earth Orbit: Biological Research & AI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/12/23/SpaceBiology/"},"url":"https://zitniklab.hms.harvard.edu/2021/12/23/SpaceBiology/"} - + NASA: Precision Space Health System | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2021-12-24T00:00:00-05:00","datePublished":"2021-12-24T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"NASA: Precision Space Health System","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2021/12/24/SpacePrecisionHealth/"},"url":"https://zitniklab.hms.harvard.edu/2021/12/24/SpacePrecisionHealth/"} - + Workshop on Graph Learning Benchmarks | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-03T00:00:00-05:00","datePublished":"2022-01-03T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Workshop on Graph Learning Benchmarks","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/03/GLB-workshop/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/03/GLB-workshop/"} - + Therapeutics Data Commons User Meetup | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-09T00:00:00-05:00","datePublished":"2022-01-09T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Therapeutics Data Commons User Meetup","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/09/TDC-user-meetup/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/09/TDC-user-meetup/"} - + Marissa Sumathipala selected as Churchill Scholar | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-15T00:00:00-05:00","datePublished":"2022-01-15T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Marissa Sumathipala selected as Churchill Scholar","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/15/Churchill-Scholarship/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/15/Churchill-Scholarship/"} - + Probing GNN Explainers Accepted to AISTATS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-20T00:00:00-05:00","datePublished":"2022-01-20T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Probing GNN Explainers Accepted to AISTATS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/20/AISTATS-paper/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/20/AISTATS-paper/"} - + Deep Graph AI for Time Series Accepted to ICLR | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-21T00:00:00-05:00","datePublished":"2022-01-21T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Deep Graph AI for Time Series Accepted to ICLR","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/21/ICLR-paper/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/21/ICLR-paper/"} - + Inferring Gene Multifunctionality | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-01-26T00:00:00-05:00","datePublished":"2022-01-26T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Inferring Gene Multifunctionality","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/01/26/Webster-paper/"},"url":"https://zitniklab.hms.harvard.edu/2022/01/26/Webster-paper/"} - + Marissa Won the Gates Cambridge Scholarship | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-02-01T00:00:00-05:00","datePublished":"2022-02-01T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Marissa Won the Gates Cambridge Scholarship","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/02/01/Gates-Scholarship/"},"url":"https://zitniklab.hms.harvard.edu/2022/02/01/Gates-Scholarship/"} - + Biomedical Graph ML Tutorial Accepted to ISMB | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-02-02T00:00:00-05:00","datePublished":"2022-02-02T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Biomedical Graph ML Tutorial Accepted to ISMB","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/02/02/ISMB-tutorial/"},"url":"https://zitniklab.hms.harvard.edu/2022/02/02/ISMB-tutorial/"} - + Graph Neural Networks for Time Series | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-02-06T00:00:00-05:00","datePublished":"2022-02-06T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Graph Neural Networks for Time Series","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/02/06/Raindrop-GNN/"},"url":"https://zitniklab.hms.harvard.edu/2022/02/06/Raindrop-GNN/"} - + Explainable Graph AI on the Capitol Hill | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-02-27T00:00:00-05:00","datePublished":"2022-02-27T00:00:00-05:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Explainable Graph AI on the Capitol Hill","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/02/27/Posters-on-the-Hill/"},"url":"https://zitniklab.hms.harvard.edu/2022/02/27/Posters-on-the-Hill/"} - + Multimodal Learning on Graphs | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-03-15T00:00:00-04:00","datePublished":"2022-03-15T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Multimodal Learning on Graphs","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/03/15/Multimodal-Graphs-Disease/"},"url":"https://zitniklab.hms.harvard.edu/2022/03/15/Multimodal-Graphs-Disease/"} - + Graph Algorithms in Biomedicine at PSB 2023 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-03-17T00:00:00-04:00","datePublished":"2022-03-17T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Graph Algorithms in Biomedicine at PSB 2023","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/03/17/PSB-graph-session/"},"url":"https://zitniklab.hms.harvard.edu/2022/03/17/PSB-graph-session/"} - + AI4Science at ICML 2022 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-03-18T00:00:00-04:00","datePublished":"2022-03-18T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"AI4Science at ICML 2022","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/03/18/ICML-AI4Science/"},"url":"https://zitniklab.hms.harvard.edu/2022/03/18/ICML-AI4Science/"} - + Yasha’s Graduate Research Fellowship | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-03-31T00:00:00-04:00","datePublished":"2022-03-31T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Yasha’s Graduate Research Fellowship","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/03/31/NDSEG-fellowship/"},"url":"https://zitniklab.hms.harvard.edu/2022/03/31/NDSEG-fellowship/"} - + NASA Space Biology | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-04-20T00:00:00-04:00","datePublished":"2022-04-20T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"NASA Space Biology","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/04/20/NASASpaceBiology/"},"url":"https://zitniklab.hms.harvard.edu/2022/04/20/NASASpaceBiology/"} - + Webster on the Cover of Cell Systems | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-04-21T00:00:00-04:00","datePublished":"2022-04-21T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Webster on the Cover of Cell Systems","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/04/21/CellSystemsCover/"},"url":"https://zitniklab.hms.harvard.edu/2022/04/21/CellSystemsCover/"} - + Building KGs to Support Precision Medicine | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-05-01T00:00:00-04:00","datePublished":"2022-05-01T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Building KGs to Support Precision Medicine","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/05/01/PrimeKG/"},"url":"https://zitniklab.hms.harvard.edu/2022/05/01/PrimeKG/"} - + New preprint on PrimeKG | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-05-01T00:00:00-04:00","datePublished":"2022-05-01T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"New preprint on PrimeKG","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/05/01/PrimeKGPreprint/"},"url":"https://zitniklab.hms.harvard.edu/2022/05/01/PrimeKGPreprint/"} - + George Named the 2022 Wojcicki Troper Fellow | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-05-20T00:00:00-04:00","datePublished":"2022-05-20T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"George Named the 2022 Wojcicki Troper Fellow","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/05/20/DasoulasHDSIFellow/"},"url":"https://zitniklab.hms.harvard.edu/2022/05/20/DasoulasHDSIFellow/"} - + Welcoming New Postdocs | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-06-07T00:00:00-04:00","datePublished":"2022-06-07T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Welcoming New Postdocs","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/06/07/NewPostdocs/"},"url":"https://zitniklab.hms.harvard.edu/2022/06/07/NewPostdocs/"} - + Broadly Generalizable Pre-Training Approach | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-06-20T00:00:00-04:00","datePublished":"2022-06-20T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Broadly Generalizable Pre-Training Approach","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/06/20/ContrastivePreTrainingTimeSeries/"},"url":"https://zitniklab.hms.harvard.edu/2022/06/20/ContrastivePreTrainingTimeSeries/"} - + Welcoming Fellows and Summer Students | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-07-04T00:00:00-04:00","datePublished":"2022-07-04T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Welcoming Fellows and Summer Students","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/07/04/SummerInterns/"},"url":"https://zitniklab.hms.harvard.edu/2022/07/04/SummerInterns/"} - + Graph AI for Precision Medicine at ISMB | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-07-09T00:00:00-04:00","datePublished":"2022-07-09T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"Graph AI for Precision Medicine at ISMB","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/07/09/ISMB-Tutorial-Materials/"},"url":"https://zitniklab.hms.harvard.edu/2022/07/09/ISMB-Tutorial-Materials/"} - + AI4Science at NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-07-16T00:00:00-04:00","datePublished":"2022-07-16T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"AI4Science at NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/07/16/NeurIPS-AI4Science/"},"url":"https://zitniklab.hms.harvard.edu/2022/07/16/NeurIPS-AI4Science/"} - + New Frontiers in Graph Learning at NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-07-16T00:00:00-04:00","datePublished":"2022-07-16T00:00:00-04:00","description":"Artificial Intelligence (AI), Deep Learning, Medicine, Science, and Drug Discovery","headline":"New Frontiers in Graph Learning at NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/07/16/NeurIPS-NewFrontiersGraphs/"},"url":"https://zitniklab.hms.harvard.edu/2022/07/16/NeurIPS-NewFrontiersGraphs/"} - + Evaluating Explainability for GNNs | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-08-22T00:00:00-04:00","datePublished":"2022-08-22T00:00:00-04:00","description":"Graph Neural Networks, Explainability","headline":"Evaluating Explainability for GNNs","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/08/22/GraphXAI/"},"url":"https://zitniklab.hms.harvard.edu/2022/08/22/GraphXAI/"} - + On Graph AI for Precision Medicine | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-08-24T00:00:00-04:00","datePublished":"2022-08-24T00:00:00-04:00","description":"Graph artificial intelligence to advance precision medicine","headline":"On Graph AI for Precision Medicine","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/08/24/ISMB22-Tutorial-Recording/"},"url":"https://zitniklab.hms.harvard.edu/2022/08/24/ISMB22-Tutorial-Recording/"} - + Multimodal Representation Learning with Graphs | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-09-05T00:00:00-04:00","datePublished":"2022-09-05T00:00:00-04:00","description":"multimodal AI, graph neural networks, geometric deep learning, artificial intelligence","headline":"Multimodal Representation Learning with Graphs","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/09/05/MGLPreprint/"},"url":"https://zitniklab.hms.harvard.edu/2022/09/05/MGLPreprint/"} - + Best Paper Honorable Mention Award at IEEE VIS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-09-06T00:00:00-04:00","datePublished":"2022-09-06T00:00:00-04:00","description":"drug repurposing, graph neural networks, artificial intelligence","headline":"Best Paper Honorable Mention Award at IEEE VIS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/09/06/BestPaperAwardIEEEVIS/"},"url":"https://zitniklab.hms.harvard.edu/2022/09/06/BestPaperAwardIEEEVIS/"} - + Self-Supervised Pre-Training at NeurIPS 2022 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-09-14T00:00:00-04:00","datePublished":"2022-09-14T00:00:00-04:00","description":"self-supervised learning, pre-training, time series","headline":"Self-Supervised Pre-Training at NeurIPS 2022","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/09/14/TF-C-NeurIPS/"},"url":"https://zitniklab.hms.harvard.edu/2022/09/14/TF-C-NeurIPS/"} - + New Paper in Nature Chemical Biology | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-09-21T00:00:00-04:00","datePublished":"2022-09-21T00:00:00-04:00","description":"therapeutic science, artificial intelligence","headline":"New Paper in Nature Chemical Biology","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/09/21/TDC-NatureChemBio/"},"url":"https://zitniklab.hms.harvard.edu/2022/09/21/TDC-NatureChemBio/"} - + New Paper in Nature Biomedical Engineering | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-10-31T00:00:00-04:00","datePublished":"2022-10-31T00:00:00-04:00","description":"graph neural networks, graph AI, graph representation learning, network science","headline":"New Paper in Nature Biomedical Engineering","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/10/31/GRL-NatureBiomedEng/"},"url":"https://zitniklab.hms.harvard.edu/2022/10/31/GRL-NatureBiomedEng/"} - + Can AI transform the way we discover new drugs? | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-11-15T00:00:00-05:00","datePublished":"2022-11-15T00:00:00-05:00","description":"graph neural networks, geometric deep learning, therapeutic science","headline":"Can AI transform the way we discover new drugs?","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/11/15/HarvardMedicineTDC/"},"url":"https://zitniklab.hms.harvard.edu/2022/11/15/HarvardMedicineTDC/"} - + Can we shorten rare disease diagnostic odyssey? | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2022-12-14T00:00:00-05:00","datePublished":"2022-12-14T00:00:00-05:00","description":"graph neural networks, rare diseases, medical diagnosis","headline":"Can we shorten rare disease diagnostic odyssey?","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2022/12/14/SHEPHERD/"},"url":"https://zitniklab.hms.harvard.edu/2022/12/14/SHEPHERD/"} - + New Network Principle for Molecular Phenotypes | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-01-02T00:00:00-05:00","datePublished":"2023-01-02T00:00:00-05:00","description":"graph neural networks, rare diseases, medical diagnosis","headline":"New Network Principle for Molecular Phenotypes","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/01/02/MutualInteractors/"},"url":"https://zitniklab.hms.harvard.edu/2023/01/02/MutualInteractors/"} - + GNNDelete published at ICLR 2023 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-01-20T00:00:00-05:00","datePublished":"2023-01-20T00:00:00-05:00","description":"graph neural networks, geometric deep learning, machine unlearning","headline":"GNNDelete published at ICLR 2023","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/01/20/GNNDelete/"},"url":"https://zitniklab.hms.harvard.edu/2023/01/20/GNNDelete/"} - + PrimeKG published in Scientific Data | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-02-01T00:00:00-05:00","datePublished":"2023-02-01T00:00:00-05:00","description":"knowledge graphs, precision medicine, multimodal analyses","headline":"PrimeKG published in Scientific Data","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/02/01/PrimeKG/"},"url":"https://zitniklab.hms.harvard.edu/2023/02/01/PrimeKG/"} - + New Preprint on Distribution Shifts | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-02-08T00:00:00-05:00","datePublished":"2023-02-08T00:00:00-05:00","description":"time series, distribution shifts, domain adaptation","headline":"New Preprint on Distribution Shifts","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/02/08/RaincoatPreprint/"},"url":"https://zitniklab.hms.harvard.edu/2023/02/08/RaincoatPreprint/"} - + Welcoming New Postdoctoral Fellows | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-02-20T00:00:00-05:00","datePublished":"2023-02-20T00:00:00-05:00","description":"machine learning for medicine and science, postdoctoral fellows","headline":"Welcoming New Postdoctoral Fellows","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/02/20/NewPostdocs/"},"url":"https://zitniklab.hms.harvard.edu/2023/02/20/NewPostdocs/"} - + GraphXAI published in Scientific Data | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-03-15T00:00:00-04:00","datePublished":"2023-03-15T00:00:00-04:00","description":"model explainability, interpretability, graph neural networks, geometric deep learning","headline":"GraphXAI published in Scientific Data","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/03/15/GraphXAI/"},"url":"https://zitniklab.hms.harvard.edu/2023/03/15/GraphXAI/"} - + TxGNN - Zero-shot prediction of therapeutic use | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-03-20T00:00:00-04:00","datePublished":"2023-03-20T00:00:00-04:00","description":"therapeutic use prediction, drug repurposing, neglected diseases, few-shot learning, geometric deep learning","headline":"TxGNN - Zero-shot prediction of therapeutic use","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/03/20/TxGNN/"},"url":"https://zitniklab.hms.harvard.edu/2023/03/20/TxGNN/"} - + Self-Driving Labs in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-03-23T00:00:00-04:00","datePublished":"2023-03-23T00:00:00-04:00","description":"Biological research and self-driving labs in deep space supported by artificial intelligence","headline":"Self-Driving Labs in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/03/23/BiologicalResearchDeepSpace-NatMachIntelligence/"},"url":"https://zitniklab.hms.harvard.edu/2023/03/23/BiologicalResearchDeepSpace-NatMachIntelligence/"} - + Precision Health in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-03-23T00:00:00-04:00","datePublished":"2023-03-23T00:00:00-04:00","description":"Biomonitoring and precision health in deep space supported by artificial intelligence","headline":"Precision Health in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/03/23/PrecisionHealthDeepSpace-NatMachIntelligence/"},"url":"https://zitniklab.hms.harvard.edu/2023/03/23/PrecisionHealthDeepSpace-NatMachIntelligence/"} - + New Study in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-04-03T00:00:00-04:00","datePublished":"2023-04-03T00:00:00-04:00","description":"Multimodal learning with graphs","headline":"New Study in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/04/03/MultimodalGraphLearning-NatMachIntelligence/"},"url":"https://zitniklab.hms.harvard.edu/2023/04/03/MultimodalGraphLearning-NatMachIntelligence/"} - + Welcoming a New Postdoctoral Fellow | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-04-13T00:00:00-04:00","datePublished":"2023-04-13T00:00:00-04:00","description":"machine learning for medicine and science, postdoctoral fellows","headline":"Welcoming a New Postdoctoral Fellow","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/04/13/NewPostdoc/"},"url":"https://zitniklab.hms.harvard.edu/2023/04/13/NewPostdoc/"} - + Celebrating Achievements of Our Undergrads | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-04-13T00:00:00-04:00","datePublished":"2023-04-13T00:00:00-04:00","description":"machine learning for medicine and science, postdoctoral fellows","headline":"Celebrating Achievements of Our Undergrads","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/04/13/Undergrads/"},"url":"https://zitniklab.hms.harvard.edu/2023/04/13/Undergrads/"} - + Universal Domain Adaptation at ICML 2023 | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-04-24T00:00:00-04:00","datePublished":"2023-04-24T00:00:00-04:00","description":"distribution shifts, label shifts, feature shift, domain adaptation, artificial intelligence","headline":"Universal Domain Adaptation at ICML 2023","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/04/24/RaincoatICML23/"},"url":"https://zitniklab.hms.harvard.edu/2023/04/24/RaincoatICML23/"} - + Congratulations to Ada and Michelle | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-05-15T00:00:00-04:00","datePublished":"2023-05-15T00:00:00-04:00","description":"PhD students, biomedical AI, chemistry","headline":"Congratulations to Ada and Michelle","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/05/15/CongratsMichelleAda/"},"url":"https://zitniklab.hms.harvard.edu/2023/05/15/CongratsMichelleAda/"} - + On Pretraining in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-06-01T00:00:00-04:00","datePublished":"2023-06-01T00:00:00-04:00","description":"Language models, pretraining, structure-inducing representation learning","headline":"On Pretraining in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/06/01/Pretraining-NatMachIntelligence/"},"url":"https://zitniklab.hms.harvard.edu/2023/06/01/Pretraining-NatMachIntelligence/"} - + Welcoming a New Postdoctoral Fellow | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-06-11T00:00:00-04:00","datePublished":"2023-06-11T00:00:00-04:00","description":"machine learning for medicine and science, postdoctoral fellows","headline":"Welcoming a New Postdoctoral Fellow","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/06/11/NewPostdoc/"},"url":"https://zitniklab.hms.harvard.edu/2023/06/11/NewPostdoc/"} - + Our Group is Joining the Kempner Institute | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-06-21T00:00:00-04:00","datePublished":"2023-06-21T00:00:00-04:00","description":"Kempner Institute, AI, Natural Intelligence","headline":"Our Group is Joining the Kempner Institute","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/06/21/Kempner/"},"url":"https://zitniklab.hms.harvard.edu/2023/06/21/Kempner/"} - + PINNACLE - Contextual AI protein model | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-07-19T00:00:00-04:00","datePublished":"2023-07-19T00:00:00-04:00","description":"Contextual AI, Protein Representation Learning","headline":"PINNACLE - Contextual AI protein model","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/07/19/PINNACLE/"},"url":"https://zitniklab.hms.harvard.edu/2023/07/19/PINNACLE/"} - + Scientific Discovery in the Age of AI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-08-02T00:00:00-04:00","datePublished":"2023-08-02T00:00:00-04:00","description":"AI for scientific discovery","headline":"Scientific Discovery in the Age of AI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/08/02/AI4Science-Nature/"},"url":"https://zitniklab.hms.harvard.edu/2023/08/02/AI4Science-Nature/"} - + Future Directions in Network Biology | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-09-17T00:00:00-04:00","datePublished":"2023-09-17T00:00:00-04:00","description":"Geometric deep learning, network biology","headline":"Future Directions in Network Biology","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/09/17/Future-NetBio/"},"url":"https://zitniklab.hms.harvard.edu/2023/09/17/Future-NetBio/"} - + New papers accepted at NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-09-22T00:00:00-04:00","datePublished":"2023-09-22T00:00:00-04:00","description":"Geometric deep learning, protein design, explainability, self-supervised learning","headline":"New papers accepted at NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/09/22/NewPapersNeurIPS/"},"url":"https://zitniklab.hms.harvard.edu/2023/09/22/NewPapersNeurIPS/"} - + Graph AI in Medicine | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-10-24T00:00:00-04:00","datePublished":"2023-10-24T00:00:00-04:00","description":"Graph AI, transfer learning, pretraining, graph neural networks, patients, EHR","headline":"Graph AI in Medicine","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/10/24/GraphAIMedicine/"},"url":"https://zitniklab.hms.harvard.edu/2023/10/24/GraphAIMedicine/"} - + Structure-Based Drug Design | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-10-24T00:00:00-04:00","datePublished":"2023-10-24T00:00:00-04:00","description":"Difffusion Models, Equivariance, Protein Design, Binding Affinity","headline":"Structure-Based Drug Design","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/10/24/SBDD/"},"url":"https://zitniklab.hms.harvard.edu/2023/10/24/SBDD/"} - + Next Generation of Therapeutics Commons | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2023-11-23T00:00:00-05:00","datePublished":"2023-11-23T00:00:00-05:00","description":"Foundation AI, Generative AI, Therapeutic Science, Drug Discovery, Clinical Drug Development","headline":"Next Generation of Therapeutics Commons","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2023/11/23/OpenPositions/"},"url":"https://zitniklab.hms.harvard.edu/2023/11/23/OpenPositions/"} - + Combinatorial Therapeutic Perturbations | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-01-01T00:00:00-05:00","datePublished":"2024-01-01T00:00:00-05:00","description":"Therapeutic Science, Chemical Perturbations, Genetic Perturbations","headline":"Combinatorial Therapeutic Perturbations","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/01/01/PDGrapher/"},"url":"https://zitniklab.hms.harvard.edu/2024/01/01/PDGrapher/"} + +ChatGPT and the Future of Science in Nature | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + +
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ChatGPT and the Future of Science in Nature

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Published: Jan 2, 2024

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Prof. Zitnik discussed the transformative role of ChatGPT and emerging AI models in advancing science and biomedical research with Nature.

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/2024/01/25/MultimodalLearning/index.html b/2024/01/25/MultimodalLearning/index.html index 1e3fbd37..1e1f6814 100644 --- a/2024/01/25/MultimodalLearning/index.html +++ b/2024/01/25/MultimodalLearning/index.html @@ -10,9 +10,9 @@ href="/favicon.png" /> - + AI’s Prospects in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-01-25T00:00:00-05:00","datePublished":"2024-01-25T00:00:00-05:00","description":"Therapeutic Science, Chemical Perturbations, Genetic Perturbations","headline":"AI’s Prospects in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/01/25/MultimodalLearning/"},"url":"https://zitniklab.hms.harvard.edu/2024/01/25/MultimodalLearning/"} - + Dean’s Innovation Award in AI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-02-01T00:00:00-05:00","datePublished":"2024-02-01T00:00:00-05:00","description":"The lab receives Dean’s Innovation Award for the Use of Artificial Intelligence in Research. HMS News Story.","headline":"Dean’s Innovation Award in AI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/02/01/HMSDeansAI/"},"url":"https://zitniklab.hms.harvard.edu/2024/02/01/HMSDeansAI/"} - + Kaneb Fellowship Award | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-02-02T00:00:00-05:00","datePublished":"2024-02-02T00:00:00-05:00","description":"The lab receives the John and Virginia Kaneb Fellowship Award at Harvard Medical School to enhance research progress in the lab.","headline":"Kaneb Fellowship Award","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/02/02/KanebFellowship/"},"url":"https://zitniklab.hms.harvard.edu/2024/02/02/KanebFellowship/"} - + NSF CAREER Award | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-02-02T00:00:00-05:00","datePublished":"2024-02-02T00:00:00-05:00","description":"The lab receives the NSF CAREER Award for our research in geometric deep learning to facilitate algorithmic and scientific advances in therapeutics.","headline":"NSF CAREER Award","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/02/02/NSFCAREER/"},"url":"https://zitniklab.hms.harvard.edu/2024/02/02/NSFCAREER/"} - + SPECTRA - Generalizability of Molecular AI | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-02-28T00:00:00-05:00","datePublished":"2024-02-28T00:00:00-05:00","description":"SPECTRA is an approach for holistic evaluation of how AI models generalize to new molecular datasets. Project website.","headline":"SPECTRA - Generalizability of Molecular AI","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/02/28/SPECTRA-model-generalizability/"},"url":"https://zitniklab.hms.harvard.edu/2024/02/28/SPECTRA-model-generalizability/"} - + PocketGen - Generating Full-Atom Ligand-Binding Protein Pockets | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-03-01T00:00:00-05:00","datePublished":"2024-03-01T00:00:00-05:00","description":"PocketGen is a deep generative model that generates residue sequence and full-atom structure of protein pockets, maximizing binding to ligands. Project website.","headline":"PocketGen - Generating Full-Atom Ligand-Binding Protein Pockets","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/03/01/PocketGen/"},"url":"https://zitniklab.hms.harvard.edu/2024/03/01/PocketGen/"} - + Weintraub Graduate Student Award | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-03-02T00:00:00-05:00","datePublished":"2024-03-02T00:00:00-05:00","description":"Michelle receives the 2024 Harold M. Weintraub Graduate Student Award. The award recognizes exceptional achievement in graduate studies in biological sciences. News Story. Congratulations!","headline":"Weintraub Graduate Student Award","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/03/02/WeintraubAward/"},"url":"https://zitniklab.hms.harvard.edu/2024/03/02/WeintraubAward/"} - + UniTS - Unified Time Series Model | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-03-04T00:00:00-05:00","datePublished":"2024-03-04T00:00:00-05:00","description":"UniTS is a unified time series model that can process classification, forecasting, anomaly detection and imputation tasks within a single model with no task-specific modules. UniTS has zero-shot, few-shot, and prompt learning capabilities. Project website.","headline":"UniTS - Unified Time Series Model","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/03/04/UniTS/"},"url":"https://zitniklab.hms.harvard.edu/2024/03/04/UniTS/"} - + Efficient ML Seminar Series | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-03-23T00:00:00-04:00","datePublished":"2024-03-23T00:00:00-04:00","description":"We started a Harvard University Efficient ML Seminar Series. Congrats to Jonathan for spearheading this initiative. Harvard Magazine covered the first meeting focusing on LLMs.","headline":"Efficient ML Seminar Series","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/03/23/EfficientMLSeminar/"},"url":"https://zitniklab.hms.harvard.edu/2024/03/23/EfficientMLSeminar/"} - + Biomedical AI Agents | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-04-04T00:00:00-04:00","datePublished":"2024-04-04T00:00:00-04:00","description":"We envision ‘AI scientists’ as systems capable of skeptical learning and reasoning that empower biomedical research through collaborative agents that integrate machine learning tools with experimental platforms.","headline":"Biomedical AI Agents","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/04/04/BIomedicalAIAgents/"},"url":"https://zitniklab.hms.harvard.edu/2024/04/04/BIomedicalAIAgents/"} - + On Knowing a Gene in Cell Systems | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-05-28T00:00:00-04:00","datePublished":"2024-05-28T00:00:00-04:00","description":"We shed light on distributional gene representations and their potential applications in biology to characterize gene function from a broader and more holistic perspective.","headline":"On Knowing a Gene in Cell Systems","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/05/28/KnowingAGene/"},"url":"https://zitniklab.hms.harvard.edu/2024/05/28/KnowingAGene/"} - + Broad MIA: Protein Language Models | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-05-29T00:00:00-04:00","datePublished":"2024-05-29T00:00:00-04:00","description":"Check out our Broad’s seminars on Multimodal protein language models for deciphering protein function.","headline":"Broad MIA: Protein Language Models","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/05/29/BroadMIA/"},"url":"https://zitniklab.hms.harvard.edu/2024/05/29/BroadMIA/"} - + TDC-2: Multimodal Foundation for Therapeutics | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-06-23T00:00:00-04:00","datePublished":"2024-06-23T00:00:00-04:00","description":"The Commons 2.0 (TDC-2) is an overhaul of Therapeutic Data Commons to catalyze research in multimodal models for drug discovery by unifying single-cell biology of diseases, biochemistry of molecules, and effects of drugs through multimodal datasets, AI-powered API endpoints, new tasks and benchmarks. Our paper.","headline":"TDC-2: Multimodal Foundation for Therapeutics","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/06/23/TDC2/"},"url":"https://zitniklab.hms.harvard.edu/2024/06/23/TDC2/"} - + Three Papers: TrialBench, 3D Structure Design, LLM Editing | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-07-13T00:00:00-04:00","datePublished":"2024-07-13T00:00:00-04:00","description":"New papers on TrialBench with AI-ready clinical trial datasets, structure-based drug design benchmark, and composable interventions for language models.","headline":"Three Papers: TrialBench, 3D Structure Design, LLM Editing","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/07/13/TrialBenchLLM3DStructure/"},"url":"https://zitniklab.hms.harvard.edu/2024/07/13/TrialBenchLLM3DStructure/"} - + Graph Diffusion Convolutions at ICML | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-07-14T00:00:00-04:00","datePublished":"2024-07-14T00:00:00-04:00","description":"Graph diffusion convolution is a geometric deep learning architecture that aggregates information from higher-order network neighbors through a generalized graph diffusion to enhance model robustness to noisy and incomplete datasets. Paper at ICML.","headline":"Graph Diffusion Convolutions at ICML","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/07/14/GraphAdversarialDiffusion/"},"url":"https://zitniklab.hms.harvard.edu/2024/07/14/GraphAdversarialDiffusion/"} - + Digital Twins as Global Health and Disease Models of Individuals | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-07-15T00:00:00-04:00","datePublished":"2024-07-15T00:00:00-04:00","description":"Paper on digitial twins outlining strategies to leverage molecular and computational techniques to construct dynamic digital twins on the scale of populations to individuals.","headline":"Digital Twins as Global Health and Disease Models of Individuals","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/07/15/DigitalTwins/"},"url":"https://zitniklab.hms.harvard.edu/2024/07/15/DigitalTwins/"} - + PINNACLE in Nature Methods | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-07-27T00:00:00-04:00","datePublished":"2024-07-27T00:00:00-04:00","description":"PINNACLE contextual AI model is published in Nature Methods. Paper. Research Briefing. Project website.","headline":"PINNACLE in Nature Methods","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/07/27/PINNACLENatureMethods/"},"url":"https://zitniklab.hms.harvard.edu/2024/07/27/PINNACLENatureMethods/"} - + How Proteins Behave in Context | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-08-15T00:00:00-04:00","datePublished":"2024-08-15T00:00:00-04:00","description":"Harvard Medicine News on our new AI tool that captures how proteins behave in context. Kempner Institute on how context matters for foundation models in biology.","headline":"How Proteins Behave in Context","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/08/15/PINNACLENews/"},"url":"https://zitniklab.hms.harvard.edu/2024/08/15/PINNACLENews/"} - + Graph AI in Medicine | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-08-28T00:00:00-04:00","datePublished":"2024-08-28T00:00:00-04:00","description":"Excited to share a new perspective on Graph Artificial Intelligence in Medicine in Annual Reviews.","headline":"Graph AI in Medicine","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/08/28/GraphAI/"},"url":"https://zitniklab.hms.harvard.edu/2024/08/28/GraphAI/"} - + TxGNN Published in Nature Medicine | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-09-25T00:00:00-04:00","datePublished":"2024-09-25T00:00:00-04:00","description":"Graph foundation model for drug repurposing published in Nature Medicine. [Harvard Gazette] [Harvard Medicine News] [Forbes] [NVIDIA] [Kempner Institute] [Harvard Crimson]","headline":"TxGNN Published in Nature Medicine","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/09/25/TxGNNNatureMedicine/"},"url":"https://zitniklab.hms.harvard.edu/2024/09/25/TxGNNNatureMedicine/"} - + Three Papers Accepted to NeurIPS | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-09-27T00:00:00-04:00","datePublished":"2024-09-27T00:00:00-04:00","description":"Exciting projects include a unified multi-task time series model, a flow-matching approach for generating protein pockets using geometric priors, and a tokenization method that produces invariant molecular representations for integration into large language models.","headline":"Three Papers Accepted to NeurIPS","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/09/27/NeurIPS2024Papers/"},"url":"https://zitniklab.hms.harvard.edu/2024/09/27/NeurIPS2024Papers/"} - + Knowledge Graph Agent for Medical Reasoning | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-10-09T00:00:00-04:00","datePublished":"2024-10-09T00:00:00-04:00","description":"New paper introducing a knowledge graph agent for complex, knowledge-intensive medical reasoning.","headline":"Knowledge Graph Agent for Medical Reasoning","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/10/09/KGARevion/"},"url":"https://zitniklab.hms.harvard.edu/2024/10/09/KGARevion/"} - + Activity Cliffs in Molecular Properties | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-10-19T00:00:00-04:00","datePublished":"2024-10-19T00:00:00-04:00","description":"New paper on activity-cliff informed contrastive learning for molecular property prediction.","headline":"Activity Cliffs in Molecular Properties","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/10/19/ACAnet/"},"url":"https://zitniklab.hms.harvard.edu/2024/10/19/ACAnet/"} - + Biomedical AI Agents in Cell | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-11-01T00:00:00-04:00","datePublished":"2024-11-01T00:00:00-04:00","description":"We envision “AI scientists” as AI agents capable of skeptical learning and reasoning that empower biomedical research by integrating ML models and biomedical tools with experimental platforms.","headline":"Biomedical AI Agents in Cell","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/11/01/AIScientist/"},"url":"https://zitniklab.hms.harvard.edu/2024/11/01/AIScientist/"} - + PocketGen in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-11-15T00:00:00-05:00","datePublished":"2024-11-15T00:00:00-05:00","description":"PocketGen is a multimodal sequence-structure generative model for designing full-atom ligand-binding protein pockets.","headline":"PocketGen in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/11/15/PocketGen/"},"url":"https://zitniklab.hms.harvard.edu/2024/11/15/PocketGen/"} - + Ayush Noori Selected as a Rhodes Scholar | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-11-17T00:00:00-05:00","datePublished":"2024-11-17T00:00:00-05:00","description":"Congratulations to Ayush Noori on being named a Rhodes Scholar! Such an incredible achievement!","headline":"Ayush Noori Selected as a Rhodes Scholar","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/11/17/RhodesScholar/"},"url":"https://zitniklab.hms.harvard.edu/2024/11/17/RhodesScholar/"} - + SPECTRA in Nature Machine Intelligence | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-12-07T00:00:00-05:00","datePublished":"2024-12-07T00:00:00-05:00","description":"Are biomedical AI models truly as smart as they seem? SPECTRA is a framework that evaluates models by considering the full spectrum of cross-split overlap: train-test similarity. SPECTRA reveals gaps in benchmarks for molecular sequence data across 19 models, including LLMs, GNNs, diffusion models, and conv nets.","headline":"SPECTRA in Nature Machine Intelligence","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/12/07/SPECTRA/"},"url":"https://zitniklab.hms.harvard.edu/2024/12/07/SPECTRA/"} - + Unified Clinical Vocabulary Embeddings | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-12-07T00:00:00-05:00","datePublished":"2024-12-07T00:00:00-05:00","description":"New paper: A unified resource provides a new representation of clinical knowledge by unifying medical vocabularies. (1) Phenotype risk score analysis across 4.57 million patients, (2) Inter-institutional clinician panels evaluate alignment with clinical knowledge across 90 diseases and 3,000 clinical codes.","headline":"Unified Clinical Vocabulary Embeddings","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/12/07/UnifiedClinicalVocabularyEmbeddings/"},"url":"https://zitniklab.hms.harvard.edu/2024/12/07/UnifiedClinicalVocabularyEmbeddings/"} - + Foundation Model for Protein Phenotypes | Zitnik Lab - + @@ -28,7 +28,7 @@ +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2024-12-16T00:00:00-05:00","datePublished":"2024-12-16T00:00:00-05:00","description":"New paper: ProCyon is a groundbreaking foundation model for modeling, generating, and predicting protein phenotypes. [Project website] [Code]","headline":"Foundation Model for Protein Phenotypes","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/2024/12/16/ProCyon/"},"url":"https://zitniklab.hms.harvard.edu/2024/12/16/ProCyon/"} + +AI Design of Proteins for Therapeutics | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + +
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AI Design of Proteins for Therapeutics

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Published: Jan 5, 2025

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New Voices piece in Cell Systems: How will computational protein design change biotechnology and therapeutic development?

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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ProCyon AI Highlighted by Kempner

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Published: Jan 5, 2025

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Thanks to Kempner Institute for highlighting our latest research, ProCyon, our protein-text foundation model for modeling protein functions.

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/2025/01/26/ICLRpapers/index.html b/2025/01/26/ICLRpapers/index.html new file mode 100644 index 00000000..ea608f89 --- /dev/null +++ b/2025/01/26/ICLRpapers/index.html @@ -0,0 +1,182 @@ + + + + + + + LLM and KG+LLM agent papers at ICLR - Zitnik Lab + + + + +LLM and KG+LLM agent papers at ICLR | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + +
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LLM and KG+LLM agent papers at ICLR

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Published: Jan 26, 2025

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New papers on test-time interventions in language models and knowledge graph based LLM agents accepted to ICLR. [KGARevion]

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/404/index.html b/404/index.html index bb8cecd7..0c3ee56e 100644 --- a/404/index.html +++ b/404/index.html @@ -10,9 +10,9 @@ href="/favicon.png" /> - -Zitnik Lab | Harvard Machine Learning for Medicine and Science - + +Zitnik Lab | Harvard AI for Medicine and Science + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Harvard Machine Learning for Medicine and Science","headline":"Zitnik Lab","url":"https://zitniklab.hms.harvard.edu/404/"} - + Data, Machines, and AI (DMAI) Reading Group | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Data, Machines, and AI (DMAI) Reading Group","url":"https://zitniklab.hms.harvard.edu/DMAI/"} - + Marinka Zitnik | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Marinka Zitnik","url":"https://zitniklab.hms.harvard.edu/bio/"} - + Towards Precision Medicine with Graph Representation Learning | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Towards Precision Medicine with Graph Representation Learning","url":"https://zitniklab.hms.harvard.edu/biomedgraphml/"} - + Marinka Zitnik | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Marinka Zitnik","url":"https://zitniklab.hms.harvard.edu/contact/"} - + Datasets | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Datasets","url":"https://zitniklab.hms.harvard.edu/data/"} - + Machine Learning for Drug Development | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Machine Learning for Drug Development","url":"https://zitniklab.hms.harvard.edu/drugml/"} - + Artificial Intelligence for Medicine and Science | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebSite","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Machine Learning (ML), Medicine, Science, and Drug Discovery at Harvard","headline":"Artificial Intelligence for Medicine and Science","name":"Zitnik Lab","url":"https://zitniklab.hms.harvard.edu/"} - + Open Positions | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Machine Learning (ML), Medicine, Science, and Drug Discovery at Harvard","headline":"Open Positions","url":"https://zitniklab.hms.harvard.edu/jobs/"} - + Scientific Community, Conferences, Workshops, Courses and Tutorials | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Scientific Community, Conferences, Workshops, Courses and Tutorials","url":"https://zitniklab.hms.harvard.edu/meetings/"} - + Recent News | Zitnik Lab - + @@ -21,13 +21,14 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Harvard Machine Learning for Medicine and Science","headline":"Recent News","url":"https://zitniklab.hms.harvard.edu/news/"} - -Page 2 of 3 for Recent News | Zitnik Lab - + +Page 2 of 4 for Recent News | Zitnik Lab + @@ -21,6 +21,7 @@ + @@ -28,7 +29,7 @@ +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Harvard Machine Learning for Medicine and Science","headline":"Recent News","url":"https://zitniklab.hms.harvard.edu/news/page2/"} - -Page 3 of 3 for Recent News | Zitnik Lab - + +Page 3 of 4 for Recent News | Zitnik Lab + @@ -21,13 +21,15 @@ + + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Harvard Machine Learning for Medicine and Science","headline":"Recent News","url":"https://zitniklab.hms.harvard.edu/news/page3/"} + +Page 4 of 4 for Recent News | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + +
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Recent News

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Dec 2019:   Deep Learning for Network Biology

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Marinka is co-editing a special issue of ACM/IEEE TCBB on Deep learning and graph embeddings for network biology. Submit your finest work!

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Dec 2019:   Welcome New Students!

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Kathleen, Jingyi, Kexin, Yujie, and Stone joined the lab. Welcome!

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/people/index.html b/people/index.html index ee1cf9da..984449b3 100644 --- a/people/index.html +++ b/people/index.html @@ -10,9 +10,9 @@ href="/favicon.png" /> - + Group Members | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Group Members","url":"https://zitniklab.hms.harvard.edu/people/"} - -Postdoctoral Research Fellow in Machine Learning and Predictive Modeling | Zitnik Lab - - + +AI Project Coordinator | Zitnik Lab + + - - - - + + + + + - + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"AI, machine learning, program manager, project manager, project coordinator, open positions","headline":"AI Project Coordinator","url":"https://zitniklab.hms.harvard.edu/postdoc-AIPM/"} - -Postdoctoral Research Fellows in Foundation AI | Zitnik Lab - - + +Postdoctoral Research Fellows in Generative, Multimodal, and Agentic AI | Zitnik Lab + + - - - - + + + + + - + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"geometric deep learning, knowledge-guided AI, generative AI, multimodal AI, agentic AI, open positions","headline":"Postdoctoral Research Fellows in Generative, Multimodal, and Agentic AI","url":"https://zitniklab.hms.harvard.edu/postdoc-ML1/"} - -Postdoctoral Research Fellow in Medical AI | Zitnik Lab - - + +Postdoctoral Research Fellows in AI for Therapeutics | Zitnik Lab + + - - - - + + + + + - + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"geometric deep learning, therapeutics, molecular drug design, multi-omics, target discovery, biomarkers, open positions","headline":"Postdoctoral Research Fellows in AI for Therapeutics","url":"https://zitniklab.hms.harvard.edu/postdoc-ML2/"} - -Postdoctoral Research Fellows and Students in AI & Therapeutics | Zitnik Lab - - + +Postdoctoral Research Fellows in Medical AI | Zitnik Lab + + - - - - + + + + + - + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"medical foundation models, precision medicine, knowledge graphs, medical reasoning, open positions","headline":"Postdoctoral Research Fellows in Medical AI","url":"https://zitniklab.hms.harvard.edu/postdoc-ML3/"} - -Postdoctoral Research Fellow in AI for Cancer Drug Discovery | Zitnik Lab - - + +Research AI Engineer | Zitnik Lab + + - - - - + + + + + - + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"research software developer, research AI engineer, open positions","headline":"Research AI Engineer","url":"https://zitniklab.hms.harvard.edu/postdoc-ResearchAIEng/"} - -Postdoctoral Research Fellow in Biomedical AI | Zitnik Lab - - - - - - - - - - - - - - - - - - - - - - - -
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Postdoctoral Research Fellow in Biomedical AI

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Overview

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Prof. Marinka Zitnik invites applications for a Postdoctoral Research Fellowship position at Harvard University.

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The successful candidate will lead research in machine learning method development and applications of the methods to some of the most impactful datasets.

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Biomedical data involve rich interactions that span from the molecular level to the level of connections between diseases in a patient and to the societal level encompassing all human interactions. These interactions at different levels give rise to a bewildering degree of complexity, which is only likely to be fully understood through data-driven and computationally enabled study. This scientific approach not only opens up new avenues for understanding nature, analyzing health, and developing medicines to help people but can impact on the way predictive modeling is performed today at the fundamental level.

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Among others, possible research projects include:

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  • Machine learning for biomedical data in efforts to set sights on new frontiers in genomics, drug discovery, and precision health beyond classic neural networks on image and sequence data.
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  • Representation learning, embedding methods, and graph neural networks in efforts to bridge the divide between research data and patient data.
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  • Fusion, learning and reasoning for knowledge graphs in efforts to combine biomedical data in their broadest sense, reduce redundancy and uncertainty, and make actionable predictions.
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  • Next-generation algorithms for networks, focusing on large networks of interactions between biomedical entities and their applications to network biology and medicine.
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  • Contextually adaptive AI in efforts to advance algorithms to train more with less data and reason about never-before-seen phenomena as algorithms encounter new patients, diseases, or cell types.
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Qualifications

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We seek highly-motivated applicants with background in one or more of the following areas: machine learning, explainable AI/ML, computational healthcare, and network science. Successful applicants will be strong technically as well as have an inclination towards real-world problems.

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We are looking for applicants with demonstrably strong research skills, ideally, with multiple publications in top venues in machine learning, artificial intelligence, and bioinformatics (e.g., ICML, NeurIPS, ICLR, KDD, AAAI, IJCAI, UAI, Bioinformatics, Nature Methods), and/or top-tier interdisciplinary journals.

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Candidates must have a Ph.D. or equivalent degree in computer science, statistics, biomedical informatics, computational biology or a closely related field. Strong programming skills and experience with machine learning frameworks and/or its applications to biology and medicine are required.

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Application process

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The position is available immediately and can be renewed annually. Interested applicants should submit the following documents via email to Prof. Zitnik and use the subject line “Postdoctoral Fellowship Application in biomedical AI”:

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  • Curriculum Vitae (please include links to your academic webpage and any software you developed, e.g., GitHub repositories)
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We are currently reviewing applications for this position. Interested candidates are encouraged to submit their applications as soon as possible.

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Advisor

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Marinka Zitnik is an Assistant Professor at Harvard University with appointments in the Department of Biomedical Informatics, Broad Institute of MIT and Harvard, and Harvard Data Science. Dr. Zitnik is a computer scientist studying machine learning, focusing on challenges brought forward by data in science, medicine, and health. Before Harvard, she was a postdoctoral fellow in Computer Science at Stanford and also a member of the Chan Zuckerberg Biohub.

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Dr. Zitnik has published extensively in top ML venues (e.g., NeurIPS, ICLR, ICML) and leading interdisciplinary journals (e.g., Nature Methods, Nature Communications, PNAS). She has organized numerous workshops and tutorials in the nexus of AI, deep learning, drug discovery, and medical AI at leading conferences (NeurIPS, ICLR, ICML, ISMB, AAAI, WWW), where she is also in the organizing committees. She also organized the National Symposium on drugs for future pandemics on behalf of the NSF.

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Dr. Zitnik’s algorithms have had a tangible impact, which has garnered the interests of government, academic, and industry researchers and has put new tools in the hands of practitioners. Her methods are used by major institutions, including Baylor College of Medicine, Karolinska Institute, Stanford Medical School, Massachusetts General Hospital, and the pharmaceutical industry.

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Dr. Zitnik’s research recently won best paper and research awards from the International Society for Computational Biology, Bayer Early Excellence in Science Award, Amazon Faculty Research Award, a Rising Star Award in EECS, and a Next Generation Recognition in Biomedicine, being the only young scientist who received such recognition in both EECS and Biomedicine.

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Harvard is an Equal Opportunity Employer.

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Latest News

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Apr 2024:   Biomedical AI Agents

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We envision ‘AI scientists’ as systems capable of skeptical learning and reasoning that empower biomedical research through collaborative agents that integrate machine learning tools with experimental platforms.

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Mar 2024:   Efficient ML Seminar Series

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We started a Harvard University Efficient ML Seminar Series. Congrats to Jonathan for spearheading this initiative. Harvard Magazine covered the first meeting focusing on LLMs.

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Mar 2024:   UniTS - Unified Time Series Model

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UniTS is a unified time series model that can process classification, forecasting, anomaly detection and imputation tasks within a single model with no task-specific modules. UniTS has zero-shot, few-shot, and prompt learning capabilities. Project website.

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Mar 2024:   Weintraub Graduate Student Award

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Michelle receives the 2024 Harold M. Weintraub Graduate Student Award. The award recognizes exceptional achievement in graduate studies in biological sciences. News Story. Congratulations!

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Mar 2024:   PocketGen - Generating Full-Atom Ligand-Binding Protein Pockets

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PocketGen is a deep generative model that generates residue sequence and full-atom structure of protein pockets, maximizing binding to ligands. Project website.

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Feb 2024:   SPECTRA - Generalizability of Molecular AI

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SPECTRA is an approach for holistic evaluation of how AI models generalize to new molecular datasets. Project website.

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Feb 2024:   Kaneb Fellowship Award

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The lab receives the John and Virginia Kaneb Fellowship Award at Harvard Medical School to enhance research progress in the lab.

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Feb 2024:   NSF CAREER Award

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The lab receives the NSF CAREER Award for our research in geometric deep learning to facilitate algorithmic and scientific advances in therapeutics.

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Feb 2024:   Dean’s Innovation Award in AI

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The lab receives Dean’s Innovation Award for the Use of Artificial Intelligence in Research. HMS News Story.

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Jan 2024:   AI's Prospects in Nature Machine Intelligence

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We discussed AI’s 2024 prospects with Nature Machine Intelligence, covering LLM progress, multimodal AI, multi-task agents, and how to bridge the digital divide across communities and world regions.

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Jan 2024:   Combinatorial Therapeutic Perturbations

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New paper introducing PDGrapher for combinatorial prediction of chemical and genetic perturbations using causally-inspired neural networks.

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Nov 2023:   Next Generation of Therapeutics Commons

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We are building the next generation of Therapeutics Commons! We are seeking outstanding fellows who will lead AI research to advance molecular drug design and clinical drug development.

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Oct 2023:   Structure-Based Drug Design

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Geometric deep learning has emerged as a valuable tool for structure-based drug design, to generate and refine biomolecules by leveraging detailed three-dimensional geometric and molecular interaction information.

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Oct 2023:   Graph AI in Medicine

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Graph AI models in medicine integrate diverse data modalities through pre-training, facilitate interactive feedback loops, and foster human-AI collaboration, paving the way to clinically meaningful predictions.

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Sep 2023:   New papers accepted at NeurIPS

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Congratulations to Owen and Zaixi for having their papers accepted as spotlights at NeurIPS! These papers introduce techniques for explaining time series models through self-supervised learning and co-designing protein pocket sequences & 3D structures.

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Sep 2023:   Future Directions in Network Biology

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Excited to share our perspectives on current and future directions in network biology.

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Aug 2023:   Scientific Discovery in the Age of AI

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New paper on the role of artificial intelligence in scientific discovery is published in Nature.

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Jul 2023:   PINNACLE - Contextual AI protein model

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PINNACLE is a contextual AI model for protein understanding that dynamically adjusts its outputs based on biological contexts in which it operates. Project website.

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Jun 2023:   Our Group is Joining the Kempner Institute

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Excited to join Kempner’s inaugural cohort of associate faculty to advance Kempner’s mission of studying the intersection of natural and artificial intelligence.

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Jun 2023:   Welcoming a New Postdoctoral Fellow

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An enthusiastic welcome to Shanghua Gao who is joining our group as a postdoctoral research fellow.

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Zitnik Lab -  ·  Artificial Intelligence in Medicine and Science -  ·  Harvard -  ·  Department of Biomedical Informatics

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+ Ayush Noori | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Ayush Noori","image":"https://zitniklab.hms.harvard.edu/img/ayush_noori.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/ayush_noori/"},"url":"https://zitniklab.hms.harvard.edu/products/ayush_noori/"} - + Grey Kuling | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Grey Kuling","image":"https://zitniklab.hms.harvard.edu/img/grey_kuling.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/grey_kuling/"},"url":"https://zitniklab.hms.harvard.edu/products/grey_kuling/"} - + Iñaki Arango | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Iñaki Arango","image":"https://zitniklab.hms.harvard.edu/img/inaki_arango.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/inaki_arango/"},"url":"https://zitniklab.hms.harvard.edu/products/inaki_arango/"} - + Intae Moon | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Intae Moon","image":"https://zitniklab.hms.harvard.edu/img/intae_moon.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/intae_moon/"},"url":"https://zitniklab.hms.harvard.edu/products/intae_moon/"} - + Katya Ivshina | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Biomedical Machine Learning, Science, and Drug Discovery","headline":"Katya Ivshina","image":"https://zitniklab.hms.harvard.edu/img/katya_ivshina.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/katya_ivshina/"},"url":"https://zitniklab.hms.harvard.edu/products/katya_ivshina/"} - + Kevin Li | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Kevin Li","image":"https://zitniklab.hms.harvard.edu/img/kevin_li.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/kevin_li/"},"url":"https://zitniklab.hms.harvard.edu/products/kevin_li/"} - + Kexin Chen | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Kexin Chen","image":"https://zitniklab.hms.harvard.edu/img/kexin_chen.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/kexin_chen/"},"url":"https://zitniklab.hms.harvard.edu/products/kexin_chen/"} - + Marinka Zitnik | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Marinka Zitnik","image":"https://zitniklab.hms.harvard.edu/img/marinka_zitnik.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/marinka_zitnik/"},"url":"https://zitniklab.hms.harvard.edu/products/marinka_zitnik/"} - + Michael Sun | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Biomedical Machine Learning, Science, and Drug Discovery","headline":"Michael Sun","image":"https://zitniklab.hms.harvard.edu/img/michael_sun.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/michael_sun/"},"url":"https://zitniklab.hms.harvard.edu/products/michael_sun/"} - + Michelle Dai | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Michelle Dai","image":"https://zitniklab.hms.harvard.edu/img/michelle_dai.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/michelle_dai/"},"url":"https://zitniklab.hms.harvard.edu/products/michelle_dai/"} - + Michelle M. Li | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Michelle M. Li","image":"https://zitniklab.hms.harvard.edu/img/michelle_li.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/michelle_li/"},"url":"https://zitniklab.hms.harvard.edu/products/michelle_li/"} - + Pengwei Sui | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Pengwei Sui","image":"https://zitniklab.hms.harvard.edu/img/pengwei_sui.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/pengwei_sui/"},"url":"https://zitniklab.hms.harvard.edu/products/pengwei_sui/"} - + Richard Zhu | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Richard Zhu","image":"https://zitniklab.hms.harvard.edu/img/richard_zhu.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/richard_zhu/"},"url":"https://zitniklab.hms.harvard.edu/products/richard_zhu/"} - + Robert Calef | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Robert Calef","image":"https://zitniklab.hms.harvard.edu/img/robert_calef.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/robert_calef/"},"url":"https://zitniklab.hms.harvard.edu/products/robert_calef/"} - + Ruth Johnson | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Ruth Johnson","image":"https://zitniklab.hms.harvard.edu/img/ruth_johnson.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/ruth_johnson/"},"url":"https://zitniklab.hms.harvard.edu/products/ruth_johnson/"} - + Shanghua Gao | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Shanghua Gao","image":"https://zitniklab.hms.harvard.edu/img/shanghua_gao.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/shanghua_gao/"},"url":"https://zitniklab.hms.harvard.edu/products/shanghua_gao/"} + +Shvat Messica | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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Shvat Messica

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PhD Student
Harvard AIM

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Shvat Messica

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PhD Student
Harvard AIM

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Description

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/products/valentina_giunchiglia/index.html b/products/valentina_giunchiglia/index.html index dcf64dac..08a50301 100644 --- a/products/valentina_giunchiglia/index.html +++ b/products/valentina_giunchiglia/index.html @@ -10,9 +10,9 @@ href="/favicon.png" /> - + Valentina Giunchiglia | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Valentina Giunchiglia","image":"https://zitniklab.hms.harvard.edu/img/valentina_giunchiglia.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/valentina_giunchiglia/"},"url":"https://zitniklab.hms.harvard.edu/products/valentina_giunchiglia/"} + +Walker Rickord | Zitnik Lab + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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Walker Rickord

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PhD Student
Harvard-MIT HST

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Walker Rickord

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PhD Student
Harvard-MIT HST

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Description

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Zitnik Lab +  ·  Artificial Intelligence in Medicine and Science +  ·  Harvard +  ·  Department of Biomedical Informatics

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+ + diff --git a/products/wanxiang_shen/index.html b/products/wanxiang_shen/index.html index 08f5cdc1..e57297c5 100644 --- a/products/wanxiang_shen/index.html +++ b/products/wanxiang_shen/index.html @@ -10,9 +10,9 @@ href="/favicon.png" /> - + Wanxiang Shen | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Wanxiang Shen","image":"https://zitniklab.hms.harvard.edu/img/wanxiang_shen.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/wanxiang_shen/"},"url":"https://zitniklab.hms.harvard.edu/products/wanxiang_shen/"} - + Xiang Lin | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Xiang Lin","image":"https://zitniklab.hms.harvard.edu/img/xiang_lin.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/xiang_lin/"},"url":"https://zitniklab.hms.harvard.edu/products/xiang_lin/"} - + Xiaorui Su | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Xiaorui Su","image":"https://zitniklab.hms.harvard.edu/img/xiaorui_su.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/xiaorui_su/"},"url":"https://zitniklab.hms.harvard.edu/products/xiaorui_su/"} - + Yasha Ektefaie | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Biomedical Machine Learning, Science, and Drug Discovery","headline":"Yasha Ektefaie","image":"https://zitniklab.hms.harvard.edu/img/yasha_ektefaie.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/yasha_ektefaie/"},"url":"https://zitniklab.hms.harvard.edu/products/yasha_ektefaie/"} - + Yepeng Huang | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Yepeng Huang","image":"https://zitniklab.hms.harvard.edu/img/yepeng_huang.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/yepeng_huang/"},"url":"https://zitniklab.hms.harvard.edu/products/yepeng_huang/"} - + Ying Jin | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Ying Jin","image":"https://zitniklab.hms.harvard.edu/img/ying_jin.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/ying_jin/"},"url":"https://zitniklab.hms.harvard.edu/products/ying_jin/"} - + Zhenglun Kong | Zitnik Lab - + @@ -23,14 +23,14 @@ - + +{"@context":"https://schema.org","@type":"BlogPosting","author":{"@type":"Person","name":"Marinka Zitnik"},"dateModified":"2025-01-26T17:22:39-05:00","datePublished":"2025-01-26T17:22:39-05:00","description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Zhenglun Kong","image":"https://zitniklab.hms.harvard.edu/img/zhenglun_kong.png","mainEntityOfPage":{"@type":"WebPage","@id":"https://zitniklab.hms.harvard.edu/products/zhenglun_kong/"},"url":"https://zitniklab.hms.harvard.edu/products/zhenglun_kong/"} - + Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"drug combinations, LLM, safety modeling, therapeutics","headline":"Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine","url":"https://zitniklab.hms.harvard.edu/projects/Clinical-knowledge-embeddings/"} - + Graph Meta Learning | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Graph Meta Learning","url":"https://zitniklab.hms.harvard.edu/projects/G-Meta/"} - + General Strategy for Unlearning in Graph Neural Networks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Graph neural networks, geometric deep learning, machine unlearning, representation learning","headline":"General Strategy for Unlearning in Graph Neural Networks","url":"https://zitniklab.hms.harvard.edu/projects/GNNDelete/"} - + Defending Graph Neural Networks against Adversarial Attacks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Defending Graph Neural Networks against Adversarial Attacks","url":"https://zitniklab.hms.harvard.edu/projects/GNNGuard/"} - + Evaluating Explainability for Graph Neural Networks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Graph AI, Explainability","headline":"Evaluating Explainability for Graph Neural Networks","url":"https://zitniklab.hms.harvard.edu/projects/GraphXAI/"} - + Knowledge Graph Based Agent for Knowledge-Intensive QA in Medicine | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"AI agent, knowledge graphs, LLM, large language models, compound system","headline":"Knowledge Graph Based Agent for Knowledge-Intensive QA in Medicine","url":"https://zitniklab.hms.harvard.edu/projects/KGARevion/"} - + Multimodal AI Predicts Clinical Outcomes of Drug Combinations from Preclinical Data | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"drug combinations, LLM, safety modeling, therapeutics","headline":"Multimodal AI Predicts Clinical Outcomes of Drug Combinations from Preclinical Data","url":"https://zitniklab.hms.harvard.edu/projects/Madrigal/"} - + Mutual Interactors as a Principle for Phenotype Discovery in Molecular Interaction Networks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Network Biology, Network Medicine","headline":"Mutual Interactors as a Principle for Phenotype Discovery in Molecular Interaction Networks","url":"https://zitniklab.hms.harvard.edu/projects/Milieu/"} - + Unified Framework for Fair and Stable Graph Representation Learning | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Unified Framework for Fair and Stable Graph Representation Learning","url":"https://zitniklab.hms.harvard.edu/projects/NIFTY/"} - + Combinatorial Prediction of Therapeutic Perturbations Using Causally-Inspired Neural Networks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"phenotype-driven drug discovery, target identification, drug discovery, graph neural network, geometric deep learning","headline":"Combinatorial Prediction of Therapeutic Perturbations Using Causally-Inspired Neural Networks","url":"https://zitniklab.hms.harvard.edu/projects/PDGrapher/"} - + Contextual AI Models for Single-Cell Protein Biology | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Protein representations, drug target identification, geometric deep learning","headline":"Contextual AI Models for Single-Cell Protein Biology","url":"https://zitniklab.hms.harvard.edu/projects/PINNACLE/"} - + Generalized Protein Pocket Generation with Prior-Informed Flow Matching | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Protein design, geometric deep learning, generative models, RNA, peptides","headline":"Generalized Protein Pocket Generation with Prior-Informed Flow Matching","url":"https://zitniklab.hms.harvard.edu/projects/PocketFlow/"} - + Efficient Generation of Protein Pockets with PocketGen | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Protein design, geometric deep learning, generative models","headline":"Efficient Generation of Protein Pockets with PocketGen","url":"https://zitniklab.hms.harvard.edu/projects/PocketGen/"} - + Precision Medicine Oriented Knowledge Graph | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Precision Medicine Oriented Knowledge Graph","url":"https://zitniklab.hms.harvard.edu/projects/PrimeKG/"} - + Multimodal Learning on Graphs for Disease Relation Extraction | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Multimodal Learning on Graphs for Disease Relation Extraction","url":"https://zitniklab.hms.harvard.edu/projects/REMAP/"} - + Domain Adaptation for Time Series Under Feature and Label Shifts | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Time series, feature shifts, distribution shifts, machine unlearning, representation learning","headline":"Domain Adaptation for Time Series Under Feature and Label Shifts","url":"https://zitniklab.hms.harvard.edu/projects/Raincoat/"} - + Graph-Guided Networks For Irregular & Complex Time Series | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Graph-Guided Networks For Irregular & Complex Time Series","url":"https://zitniklab.hms.harvard.edu/projects/Raindrop/"} - + Deep Learning for Diagnosing Patients with Rare Genetic Diseases | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence, Graph AI, Deep Learning, Rare Diseases, Medicial Diagnosis","headline":"Deep Learning for Diagnosing Patients with Rare Genetic Diseases","url":"https://zitniklab.hms.harvard.edu/projects/SHEPHERD/"} - + Structure Inducing Pre-Training | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Pre-training, language models, foundation models, artificial intelligence, machine learning","headline":"Structure Inducing Pre-Training","url":"https://zitniklab.hms.harvard.edu/projects/SIPT/"} - + Evaluating Generalizability of Molecular AI Models | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"SPECTRA paves the way for a more comprehensive evaluation of foundation models in molecular biology.","headline":"Evaluating Generalizability of Molecular AI Models","url":"https://zitniklab.hms.harvard.edu/projects/SPECTRA/"} - + Subgraph Neural Networks | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Subgraph Neural Networks","url":"https://zitniklab.hms.harvard.edu/projects/SubGNN/"} - + Self-Supervised Contrastive Pre-Training For Time Series | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Self-Supervised Contrastive Pre-Training For Time Series","url":"https://zitniklab.hms.harvard.edu/projects/TF-C/"} - + Encoding Time-Series Explanations through Self-Supervised Model Behavior Consistency | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Self-supervised learning, artificial Intelligence, time series models, transformers","headline":"Encoding Time-Series Explanations through Self-Supervised Model Behavior Consistency","url":"https://zitniklab.hms.harvard.edu/projects/TimeX/"} - + A Foundation Model for Clinician Centered Drug Repurposing | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Therapeutic use prediction, knowledge graphs, artificial intelligence, machine learning","headline":"A Foundation Model for Clinician Centered Drug Repurposing","url":"https://zitniklab.hms.harvard.edu/projects/TxGNN/"} - + UniTS - A Unified Multi-Task Time Series Model | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Time series, longitudinal datasets, forecasting, classification, anomaly detection, imputation, classification","headline":"UniTS - A Unified Multi-Task Time Series Model","url":"https://zitniklab.hms.harvard.edu/projects/UniTS/"} - + Similarity search in knowledge graphs using meta paths | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"knowledge graphs, multimodal AI, meta paths","headline":"Similarity search in knowledge graphs using meta paths","url":"https://zitniklab.hms.harvard.edu/projects/metapaths/"} - + Population-Scale Identification of Differential Adverse Events Before and During a Pandemic | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery","headline":"Population-Scale Identification of Differential Adverse Events Before and During a Pandemic","url":"https://zitniklab.hms.harvard.edu/projects/patient-safety/"} - + scCIPHER - Contextual Deep Learning on Single-Cell Knowledge Graphs for Precision Medicine in Neurological Disorders | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Protein representations, drug target identification, geometric deep learning","headline":"scCIPHER - Contextual Deep Learning on Single-Cell Knowledge Graphs for Precision Medicine in Neurological Disorders","url":"https://zitniklab.hms.harvard.edu/projects/scCIPHER/"} - + Publications | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Publications","url":"https://zitniklab.hms.harvard.edu/publications/"} - + Research Directions | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Machine Learning, Medicine, Science, and Drug Discovery at Harvard","headline":"Research Directions","url":"https://zitniklab.hms.harvard.edu/research/"} - + Artificial Intelligence & Machine Learning Methods | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Medicine, Science, and Drug Discovery at Harvard","headline":"Artificial Intelligence & Machine Learning Methods","url":"https://zitniklab.hms.harvard.edu/software/"} - + Marinka Zitnik | Zitnik Lab - + @@ -21,12 +21,13 @@ + +{"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Marinka Zitnik"},"description":"Artificial Intelligence (AI), Machine Learning, Medicine, Science at Harvard","headline":"Marinka Zitnik","url":"https://zitniklab.hms.harvard.edu/talks/"}