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DESCRIPTION
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Package: ragp
Type: Package
Title: Mining for Hydroxyproline rich glycoprotein sequences
Version: 0.3.5.9000
Authors@R: c(
person("Milan", "Dragicevic", email = "[email protected]",
role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9422-2952")),
person("Danijela", "Paunovic", role = "aut"),
person("Milica", "Bogdanovic", role = "ctb"),
person("Ana", "Simonovic", role = "ctb"),
person("Sladjana", "Todorovic", role = "ctb")
)
Description: Identification of plant hydroxyproline rich glycoprotein sequences
by performing sequence bias and motif search, prediction of
hydroxylated proline residues and scraping relevant data from
web based prediction services.
Depends: R (>= 3.5.0)
License: file LICENSE
LazyData: true
Imports:
xgboost (>= 1.1.1.1),
stringr (>= 1.2.0),
httr (>= 1.3.1),
xml2 (>= 1.1.1),
seqinr(>= 3.3),
utils (>= 3.3),
graphics (>= 3.3),
ggplot2 (>= 2.2.1),
Biostrings,
BiocGenerics
RoxygenNote: 7.1.1
Suggests:
protr,
knitr,
rmarkdown,
dplyr,
eulerr,
covr
URL: https://github.com/missuse/ragp
BugReports: https://github.com/missuse/ragp/issues
Encoding: UTF-8
VignetteBuilder: knitr
Remotes:
bioc::release/Biostrings,
bioc::release/BiocGenerics