From ec66a5010eae9b5dd0527801529a71b11a1fe67b Mon Sep 17 00:00:00 2001
From: Aled Jones <aledjones@nhs.net>
Date: Wed, 8 Jun 2022 16:41:24 +0100
Subject: [PATCH] removes all instances of this string form pythonpath

---
 wscleaner/env/activate_env_vars.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/wscleaner/env/activate_env_vars.sh b/wscleaner/env/activate_env_vars.sh
index b77e02c..20ed87b 100644
--- a/wscleaner/env/activate_env_vars.sh
+++ b/wscleaner/env/activate_env_vars.sh
@@ -5,6 +5,6 @@ export wsc_PPCACHE=$PYTHONPATH
 
 # Remove the dxtoolkit path from the pythonpath environment variable
 # Python searches this when importing modules, causing clashes with conda install 
-PYTHONPATH_CLEAN=$(echo $PYTHONPATH | sed s,/usr/share/dnanexus/lib/python2.7/site-packages:,,)
+PYTHONPATH_CLEAN=$(echo $PYTHONPATH | sed s,/usr/share/dnanexus/lib/python2.7/site-packages:,,g)
 # Set the new pythonpath
 export PYTHONPATH=$PYTHONPATH_CLEAN