CONSENT on clustered cDNA with small Window Size

[jkbenotmane]

Hi after reconsidering CONSENT-correct,

wouldn´t it make sense to use it with a small clustered Reads from a Clustering Algorithm (e.g. isONClust, RATTLE) and then correct the Reads using a small Windowsize to retain highly variable Splice Junctions?

Trying that approch gave me considerable Results but I couldn´t lower the window Size lower then 70.
Might this be related to Computation Power (I am trying it on Laptop with 64Gb Ram) or might there be a deeper Reason?