From d933e9d048d53c28ec59503fafa0ad29d756111a Mon Sep 17 00:00:00 2001 From: PIerre Morisse Date: Mon, 28 Jun 2021 15:29:37 +0200 Subject: [PATCH] Remove useless semicolon --- src/SVOutput.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/SVOutput.cpp b/src/SVOutput.cpp index b81919e..752cf6c 100644 --- a/src/SVOutput.cpp +++ b/src/SVOutput.cpp @@ -36,7 +36,7 @@ void outputSVsAsVCF(robin_hood::unordered_set& finalSVs, stri if (s.type != "TRA") { out << s.chr1 << "\t" << s.breakpoint1 << "\t" << "call_" << calls << "\t" << twoBitsToString(genomeIndex[s.chr1][s.breakpoint1 * 2], genomeIndex[s.chr1][s.breakpoint1 * 2 + 1]) << "\t" << "<" << s.type << ">" << "\t" << s.barcodes + s.pairSupport << "\t" << "PASS" << "\t" << "SVTYPE=" << s.type << ";END=" << s.breakpoint2 - << ";SVLEN=" << s.breakpoint2 - s.breakpoint1 + 1 << ";" << ";BARCODES=" << s.barcodes << ";PAIRS=" << s.pairSupport << endl; + << ";SVLEN=" << s.breakpoint2 - s.breakpoint1 + 1 << ";BARCODES=" << s.barcodes << ";PAIRS=" << s.pairSupport << endl; } else { // TODO: gather 4 breakpoints for translocations? out << s.chr1 << "\t" << s.breakpoint1 << "\t" << "call_" << calls << "_1" << "\t" << twoBitsToString(genomeIndex[s.chr1][s.breakpoint1 * 2], genomeIndex[s.chr1][s.breakpoint1 * 2 + 1])