pyproject.toml

[tool.poetry]
name = "postprocessing_variant_calls"
version = "0.2.7"
description = "This hosts multiple scripts necessary for filtering and processing of variant calls in the vcfs/txt file generated by callers."
authors = ["Ronak Shah <shahr2@mskcc.org>", "Karthigayini Sivaprakasam <sivaprk@mskcc.org>", "Eric Buehler <buehlere@mskcc.org>"]
readme = "README.md"  # Markdown files are supported
repository = "https://github.com/msk-access/postprocessing_variant_calls"
homepage = "https://cmo-ci.gitbook.io/postprocessing_variant_calls/"
packages = [
    { include = "utils" },
    { include = "postprocessing_variant_calls" }
]


[tool.poetry.dependencies]
python = ">=3.8"
typer = {extras = ["all"], version = "*"} # "^0.3"
PyVCF3 = "*"
pandas = "*"
numpy = "*"

[tool.poetry.dev-dependencies]
flake8 = "*"
pytest = "*"
typer-cli = "*"
black = "*"

[tool.poetry.scripts]
pv = "postprocessing_variant_calls.main:app"

[build-system]
requires = ["poetry>=1.0.0"]
build-backend = "poetry.masonry.api"