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Duplicated sample IDs with different expression of genes in TCGA BRCA data #10

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mxdeluca opened this issue Jul 9, 2020 · 1 comment
Open

Duplicated sample IDs with different expression of genes in TCGA BRCA data #10

mxdeluca opened this issue Jul 9, 2020 · 1 comment

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@mxdeluca
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mxdeluca commented Jul 9, 2020

Hi, after downloading the data you provided on figshare (brca-rsem-count-tcga.txt.gz and brca-rsem-count-tcga-t.txt.gz), I noticed duplicated samples in the data, but with a completely different expression pattern of gene expression (they are not even close together after doing a PCA/tSNE visualization...) Any idea of what may be happening there?
@snijesh
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snijesh commented Jun 29, 2022

Check out this:

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@snijesh @mxdeluca