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i run on stomics DCS cloud with this command
/opt/conda/bin/amrfinder -i myfasta/AM10.bin.16.fa -o /data/output -d /data/input/Files/mydb/AMRFinder2023_db
but i got error like this
*** ERROR ***
Cannot convert "ident_min" to number
anyone can understand about this issue? my amrfinder is 3.11.2 version i install it via conda
The text was updated successfully, but these errors were encountered:
$ amrfinder --help
...
-i MIN_IDENT, --ident_min MIN_IDENT
Minimum proportion of identical amino acids in alignment for hit (0..1). -1 means use a curated threshold if it exists and 0.9 otherwise
Default: -1
...
Probably -i should be replaced by -p or -n.
evolarjun
added
the
usage
The answer has to do with knowing how to run or interpret output
label
Feb 3, 2025
i run on stomics DCS cloud with this command
/opt/conda/bin/amrfinder -i myfasta/AM10.bin.16.fa -o /data/output -d /data/input/Files/mydb/AMRFinder2023_db
but i got error like this
*** ERROR ***
Cannot convert "ident_min" to number
anyone can understand about this issue? my amrfinder is 3.11.2 version i install it via conda
The text was updated successfully, but these errors were encountered: